IGVFDS0901BUZQ

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 184)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 468

Submitter Comment

Does not have corresponding scRNA seq MeasurementSet due to failed QC

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

30 items

Read Names

IGVFFI0171NMZP

fastq

reads

9162

IGVFFI3799CQLH

Illumina NovaSeq X

22LMVNLT4

674 MB

Jason Buenrostro, Broad

validated

IGVFFI0876PAVE

fastq

reads

8970

IGVFFI0437NJTH

Illumina NovaSeq X

22LMVNLT4

787 MB

Jason Buenrostro, Broad

validated

IGVFFI2288NRVY

fastq

reads

806

Barcode index

IGVFFI5145SRIJ

Illumina NovaSeq X

22773CLT3

991 MB

Jason Buenrostro, Broad

validated

IGVFFI2321LXQT

fastq

reads

8490

IGVFFI7897QAFG

Illumina NovaSeq X

22LMVNLT4

765 MB

Jason Buenrostro, Broad

validated

IGVFFI3015LPKX

fastq

reads

806

IGVFFI5145SRIJ

Illumina NovaSeq X

22773CLT3

997 MB

Jason Buenrostro, Broad

validated

IGVFFI3062HWSO

fastq

reads

806

IGVFFI5145SRIJ

Illumina NovaSeq X

22773CLT3

2.2 GB

Jason Buenrostro, Broad

validated

IGVFFI3098NGVX

fastq

reads

8682

IGVFFI7207UFGC

Illumina NovaSeq X

22LMVNLT4

839 MB

Jason Buenrostro, Broad

validated

IGVFFI3780OQBE

fastq

reads

9066

IGVFFI6706DZJB

Illumina NovaSeq X

22LMVNLT4

819 MB

Jason Buenrostro, Broad

validated

IGVFFI3808LOAA

fastq

reads

8874

Barcode index

IGVFFI7492YDMR

Illumina NovaSeq X

22LMVNLT4

533 MB

Jason Buenrostro, Broad

validated

IGVFFI3953UNPO

fastq

reads

8970

Barcode index

IGVFFI0437NJTH

Illumina NovaSeq X

22LMVNLT4

505 MB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM2147DYYV

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 184)