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INDEXED
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MeasurementSet
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IGVFDS0885VFHW
IGVFDS0885VFHW
released
Json view
File Set Type
experimental data
Summary
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Assay Term
massively parallel reporter assay
Sample Summaries
mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days, male, Mus musculus WD44 modified with a reporter library
Construct Library Sets
IGVFDS7655GRFI
Reporter library targeting accessible genome regions in many genomic loci
Protocols
https://www.protocols.io/file/n92rb7r27.pdf
Aliases
jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day14_reads
Publications
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters
Sequencing Results (Illumina)
3 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI4237YHUT
fastq
reads
R3
1
Illumina NextSeq 2000
AAANJV7HV
1
400 MB
Jay Shendure, UW
validated
IGVFFI4531KBUU
fastq
reads
R1
1
Illumina NextSeq 2000
AAANJV7HV
1
387 MB
Jay Shendure, UW
validated
IGVFFI5972BUFI
fastq
reads
R2
1
Illumina NextSeq 2000
AAANJV7HV
1
322 MB
Jay Shendure, UW
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM3546ITTD
InVitroSystem
mouse embryonic stem cell
mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days, male, Mus musculus WD44 modified with a reporter library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO3898MNLZ
jay-shendure:WD44_donor
male
Mus musculus
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2622CKLA
AnalysisSet
principal analysis of MPRA data
jay-shendure:analysis_set_scQers_mEBs_bulk
Jay Shendure, UW
Auxiliary Datasets
1 item
Accession
Type
Summary
Files
Aliases
Lab
IGVFDS3480ASIH
AuxiliarySet
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
IGVFFI0839OMDY
,
IGVFFI7919FFPL
,
IGVFFI1349RXMP
jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day14_reads
Jay Shendure, UW
Attribution
Award
HG011966
Principal Investigator(s)
Jay Shendure
,
Nadav Ahituv
,
Martin Kircher
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW