IGVFDS0880SMRE

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 5 days (cellular sub pool: SS-PKR 167)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 368

Submitter Comment

Does not have corresponding scRNA seq MeasurementSet due to failed QC

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

30 items

Read Names

IGVFFI0069FFDM

fastq

reads

8912

IGVFFI2799OVGI

Illumina NovaSeq X

22LMVNLT4

358 MB

Jason Buenrostro, Broad

validated

IGVFFI0155XWKH

fastq

reads

8432

Barcode index

IGVFFI3354BODC

Illumina NovaSeq X

22LMVNLT4

234 MB

Jason Buenrostro, Broad

validated

IGVFFI0822WGFC

fastq

reads

802

Barcode index

IGVFFI8563DSJK

Illumina NovaSeq X

22773CLT3

745 MB

Jason Buenrostro, Broad

validated

IGVFFI1891XIKP

fastq

reads

820

Barcode index

IGVFFI6517GBXB

Illumina NovaSeq X

22773CLT3

748 MB

Jason Buenrostro, Broad

validated

IGVFFI1938YMLS

fastq

reads

8720

Barcode index

IGVFFI9286AVXV

Illumina NovaSeq X

22LMVNLT4

226 MB

Jason Buenrostro, Broad

validated

IGVFFI1973LMGN

fastq

reads

802

IGVFFI8563DSJK

Illumina NovaSeq X

22773CLT3

857 MB

Jason Buenrostro, Broad

validated

IGVFFI1975XRFV

fastq

reads

8528

IGVFFI7622NALS

Illumina NovaSeq X

22LMVNLT4

393 MB

Jason Buenrostro, Broad

validated

IGVFFI2568LOXM

fastq

reads

8432

IGVFFI3354BODC

Illumina NovaSeq X

22LMVNLT4

409 MB

Jason Buenrostro, Broad

validated

IGVFFI2780JZGE

fastq

reads

8432

IGVFFI3354BODC

Illumina NovaSeq X

22LMVNLT4

396 MB

Jason Buenrostro, Broad

validated

IGVFFI2970LPOP

fastq

reads

8528

IGVFFI7622NALS

Illumina NovaSeq X

22LMVNLT4

380 MB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM2260RCEH

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 5 days (cellular sub pool: SS-PKR 167)