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IGVFDS0865NCHS

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 6 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP027_G4_RNA

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R1
1
Read 1
19UBCA4LE
6
15 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19UBCA4LE
5
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
19UBCA4LE
5
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
19UBCA4LE
6
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
19UBCA4LE
6
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19UBCA4LE
6
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19UBCA4LE
5
15 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
19UBCA4LE
5
11 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 6 more samples

Donors

8 items
Aliases
  • igvf:corces_donor_BANN0218
male
Homo sapiens
  • igvf:corces_donor_BANN1344
female
Homo sapiens
  • igvf:corces_donor_BANN1809
male
Homo sapiens
  • igvf:corces_donor_BANN0526
male
Homo sapiens
  • igvf:corces_donor_BANN0919
male
Homo sapiens
  • igvf:corces_donor_BANN2005
male
Homo sapiens
  • igvf:corces_donor_BANN1235
male
Homo sapiens
  • igvf:corces_donor_BANN1637
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP027_G4_ATAC
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF