{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS0861MZYT/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0861MZYT",
"aliases": [
"jesse-engreitz:240908-S029-PPIF_5SpliceSitePool-THP1-PE2_Exp6_NegControl_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS0861MZYT](/measurement-sets/IGVFDS0861MZYT/) has sequence file(s) [IGVFFI7295ORRO](/sequence-files/IGVFFI7295ORRO/), [IGVFFI4036POXY](/sequence-files/IGVFFI4036POXY/), [IGVFFI8932WAEO](/sequence-files/IGVFFI8932WAEO/), [IGVFFI1735WJCM](/sequence-files/IGVFFI1735WJCM/), [IGVFFI8726ULXT](/sequence-files/IGVFFI8726ULXT/), [IGVFFI7511SZAY](/sequence-files/IGVFFI7511SZAY/), [IGVFFI1666KGAL](/sequence-files/IGVFFI1666KGAL/), [IGVFFI3912UHZL](/sequence-files/IGVFFI3912UHZL/), [IGVFFI5107FNAF](/sequence-files/IGVFFI5107FNAF/), [IGVFFI9210FKJW](/sequence-files/IGVFFI9210FKJW/), [IGVFFI4820UTCR](/sequence-files/IGVFFI4820UTCR/), [IGVFFI0779URUE](/sequence-files/IGVFFI0779URUE/), [IGVFFI1474NQRY](/sequence-files/IGVFFI1474NQRY/), [IGVFFI3067OHXB](/sequence-files/IGVFFI3067OHXB/), [IGVFFI6496PUWJ](/sequence-files/IGVFFI6496PUWJ/), [IGVFFI8566WHOR](/sequence-files/IGVFFI8566WHOR/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS0861MZYT/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0861MZYT](/measurement-sets/IGVFDS0861MZYT/) has sequence file(s): [IGVFFI7295ORRO](/sequence-files/IGVFFI7295ORRO/), [IGVFFI4036POXY](/sequence-files/IGVFFI4036POXY/), [IGVFFI8932WAEO](/sequence-files/IGVFFI8932WAEO/), [IGVFFI1735WJCM](/sequence-files/IGVFFI1735WJCM/), [IGVFFI8726ULXT](/sequence-files/IGVFFI8726ULXT/), [IGVFFI7511SZAY](/sequence-files/IGVFFI7511SZAY/), [IGVFFI1666KGAL](/sequence-files/IGVFFI1666KGAL/), [IGVFFI3912UHZL](/sequence-files/IGVFFI3912UHZL/), [IGVFFI5107FNAF](/sequence-files/IGVFFI5107FNAF/), [IGVFFI9210FKJW](/sequence-files/IGVFFI9210FKJW/), [IGVFFI4820UTCR](/sequence-files/IGVFFI4820UTCR/), [IGVFFI0779URUE](/sequence-files/IGVFFI0779URUE/), [IGVFFI1474NQRY](/sequence-files/IGVFFI1474NQRY/), [IGVFFI3067OHXB](/sequence-files/IGVFFI3067OHXB/), [IGVFFI6496PUWJ](/sequence-files/IGVFFI6496PUWJ/), [IGVFFI8566WHOR](/sequence-files/IGVFFI8566WHOR/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0861MZYT/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS0861MZYT](/measurement-sets/IGVFDS0861MZYT/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS0861MZYT/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
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"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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},
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},
{
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