{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS0839SQRJ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0839SQRJ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0890ULSF](/in-vitro-systems/IGVFSM0890ULSF/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0890ULSF/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS0839SQRJ](/measurement-sets/IGVFDS0839SQRJ/) has sequence file(s) [IGVFFI7153UGVK](/sequence-files/IGVFFI7153UGVK/), [IGVFFI5582FKUS](/sequence-files/IGVFFI5582FKUS/), [IGVFFI0242JSKB](/sequence-files/IGVFFI0242JSKB/), [IGVFFI3683VWLI](/sequence-files/IGVFFI3683VWLI/), [IGVFFI9133MIOX](/sequence-files/IGVFFI9133MIOX/), [IGVFFI6370OHKN](/sequence-files/IGVFFI6370OHKN/), [IGVFFI3739XFPS](/sequence-files/IGVFFI3739XFPS/), [IGVFFI0673DVOG](/sequence-files/IGVFFI0673DVOG/), [IGVFFI1594RLYS](/sequence-files/IGVFFI1594RLYS/), [IGVFFI7130VZAO](/sequence-files/IGVFFI7130VZAO/), [IGVFFI8601GRVM](/sequence-files/IGVFFI8601GRVM/), [IGVFFI5357MXXH](/sequence-files/IGVFFI5357MXXH/), [IGVFFI2394UNNV](/sequence-files/IGVFFI2394UNNV/), [IGVFFI1118EWBM](/sequence-files/IGVFFI1118EWBM/), [IGVFFI3605UGTT](/sequence-files/IGVFFI3605UGTT/), [IGVFFI6093YBAZ](/sequence-files/IGVFFI6093YBAZ/), [IGVFFI0963OPXG](/sequence-files/IGVFFI0963OPXG/), [IGVFFI3398EYGW](/sequence-files/IGVFFI3398EYGW/), [IGVFFI3070RDZQ](/sequence-files/IGVFFI3070RDZQ/), [IGVFFI8589UWNL](/sequence-files/IGVFFI8589UWNL/), [IGVFFI8770XIYP](/sequence-files/IGVFFI8770XIYP/), [IGVFFI9740OJZC](/sequence-files/IGVFFI9740OJZC/), [IGVFFI5683NIXR](/sequence-files/IGVFFI5683NIXR/), [IGVFFI8301AKCU](/sequence-files/IGVFFI8301AKCU/), [IGVFFI7795QKJJ](/sequence-files/IGVFFI7795QKJJ/), [IGVFFI6226NROV](/sequence-files/IGVFFI6226NROV/), [IGVFFI0501JGMG](/sequence-files/IGVFFI0501JGMG/), [IGVFFI4885ANSD](/sequence-files/IGVFFI4885ANSD/), [IGVFFI3562UGCX](/sequence-files/IGVFFI3562UGCX/), [IGVFFI5176UXJE](/sequence-files/IGVFFI5176UXJE/), [IGVFFI1028LFBE](/sequence-files/IGVFFI1028LFBE/), [IGVFFI0318GWBO](/sequence-files/IGVFFI0318GWBO/), [IGVFFI0794PHCL](/sequence-files/IGVFFI0794PHCL/), [IGVFFI1499PCQB](/sequence-files/IGVFFI1499PCQB/), [IGVFFI4630DQJD](/sequence-files/IGVFFI4630DQJD/), [IGVFFI6581YWEB](/sequence-files/IGVFFI6581YWEB/), [IGVFFI6611WMMZ](/sequence-files/IGVFFI6611WMMZ/), [IGVFFI2441TLMB](/sequence-files/IGVFFI2441TLMB/), [IGVFFI3311DACT](/sequence-files/IGVFFI3311DACT/), [IGVFFI3479SGDW](/sequence-files/IGVFFI3479SGDW/), [IGVFFI4337UZYQ](/sequence-files/IGVFFI4337UZYQ/), [IGVFFI2899LEMP](/sequence-files/IGVFFI2899LEMP/), [IGVFFI2613DCAO](/sequence-files/IGVFFI2613DCAO/), [IGVFFI1350LNYJ](/sequence-files/IGVFFI1350LNYJ/), [IGVFFI4789BDNT](/sequence-files/IGVFFI4789BDNT/), [IGVFFI4377YQQR](/sequence-files/IGVFFI4377YQQR/), [IGVFFI4436PDOZ](/sequence-files/IGVFFI4436PDOZ/), [IGVFFI5062TFTZ](/sequence-files/IGVFFI5062TFTZ/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS0839SQRJ/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0839SQRJ](/measurement-sets/IGVFDS0839SQRJ/) has sequence file(s): [IGVFFI7153UGVK](/sequence-files/IGVFFI7153UGVK/), [IGVFFI5582FKUS](/sequence-files/IGVFFI5582FKUS/), [IGVFFI0242JSKB](/sequence-files/IGVFFI0242JSKB/), [IGVFFI3683VWLI](/sequence-files/IGVFFI3683VWLI/), [IGVFFI9133MIOX](/sequence-files/IGVFFI9133MIOX/), [IGVFFI6370OHKN](/sequence-files/IGVFFI6370OHKN/), [IGVFFI3739XFPS](/sequence-files/IGVFFI3739XFPS/), [IGVFFI0673DVOG](/sequence-files/IGVFFI0673DVOG/), [IGVFFI1594RLYS](/sequence-files/IGVFFI1594RLYS/), [IGVFFI7130VZAO](/sequence-files/IGVFFI7130VZAO/), [IGVFFI8601GRVM](/sequence-files/IGVFFI8601GRVM/), [IGVFFI5357MXXH](/sequence-files/IGVFFI5357MXXH/), [IGVFFI2394UNNV](/sequence-files/IGVFFI2394UNNV/), [IGVFFI1118EWBM](/sequence-files/IGVFFI1118EWBM/), [IGVFFI3605UGTT](/sequence-files/IGVFFI3605UGTT/), [IGVFFI6093YBAZ](/sequence-files/IGVFFI6093YBAZ/), [IGVFFI0963OPXG](/sequence-files/IGVFFI0963OPXG/), [IGVFFI3398EYGW](/sequence-files/IGVFFI3398EYGW/), [IGVFFI3070RDZQ](/sequence-files/IGVFFI3070RDZQ/), [IGVFFI8589UWNL](/sequence-files/IGVFFI8589UWNL/), [IGVFFI8770XIYP](/sequence-files/IGVFFI8770XIYP/), [IGVFFI9740OJZC](/sequence-files/IGVFFI9740OJZC/), [IGVFFI5683NIXR](/sequence-files/IGVFFI5683NIXR/), [IGVFFI8301AKCU](/sequence-files/IGVFFI8301AKCU/), [IGVFFI7795QKJJ](/sequence-files/IGVFFI7795QKJJ/), [IGVFFI6226NROV](/sequence-files/IGVFFI6226NROV/), [IGVFFI0501JGMG](/sequence-files/IGVFFI0501JGMG/), [IGVFFI4885ANSD](/sequence-files/IGVFFI4885ANSD/), [IGVFFI3562UGCX](/sequence-files/IGVFFI3562UGCX/), [IGVFFI5176UXJE](/sequence-files/IGVFFI5176UXJE/), [IGVFFI1028LFBE](/sequence-files/IGVFFI1028LFBE/), [IGVFFI0318GWBO](/sequence-files/IGVFFI0318GWBO/), [IGVFFI0794PHCL](/sequence-files/IGVFFI0794PHCL/), [IGVFFI1499PCQB](/sequence-files/IGVFFI1499PCQB/), [IGVFFI4630DQJD](/sequence-files/IGVFFI4630DQJD/), [IGVFFI6581YWEB](/sequence-files/IGVFFI6581YWEB/), [IGVFFI6611WMMZ](/sequence-files/IGVFFI6611WMMZ/), [IGVFFI2441TLMB](/sequence-files/IGVFFI2441TLMB/), [IGVFFI3311DACT](/sequence-files/IGVFFI3311DACT/), [IGVFFI3479SGDW](/sequence-files/IGVFFI3479SGDW/), [IGVFFI4337UZYQ](/sequence-files/IGVFFI4337UZYQ/), [IGVFFI2899LEMP](/sequence-files/IGVFFI2899LEMP/), [IGVFFI2613DCAO](/sequence-files/IGVFFI2613DCAO/), [IGVFFI1350LNYJ](/sequence-files/IGVFFI1350LNYJ/), [IGVFFI4789BDNT](/sequence-files/IGVFFI4789BDNT/), [IGVFFI4377YQQR](/sequence-files/IGVFFI4377YQQR/), [IGVFFI4436PDOZ](/sequence-files/IGVFFI4436PDOZ/), [IGVFFI5062TFTZ](/sequence-files/IGVFFI5062TFTZ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0839SQRJ/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS0839SQRJ](/measurement-sets/IGVFDS0839SQRJ/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS0839SQRJ/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS5128CXIS/",
"accession": "IGVFDS5128CXIS",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-12-13T08:01:46.940716+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI7153UGVK/",
"accession": "IGVFFI7153UGVK",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:59:35.780313+00:00",
"file_format": "fastq",
"file_size": 1805626,
"href": "/sequence-files/IGVFFI7153UGVK/@@download/IGVFFI7153UGVK.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0ba4d28c-c3d5-4f46-bd61-b4c120ec0d98/IGVFFI7153UGVK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep12_S324_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5582FKUS/",
"accession": "IGVFFI5582FKUS",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:08:14.543400+00:00",
"file_format": "fastq",
"file_size": 9060213,
"href": "/sequence-files/IGVFFI5582FKUS/@@download/IGVFFI5582FKUS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/c1dfdc18-ad0b-498d-bc7e-706fb675f9b5/IGVFFI5582FKUS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep2_S314_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0242JSKB/",
"accession": "IGVFFI0242JSKB",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:21:24.643381+00:00",
"file_format": "fastq",
"file_size": 10999374,
"href": "/sequence-files/IGVFFI0242JSKB/@@download/IGVFFI0242JSKB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/fb588e79-1d50-4379-a79e-9b3a8123aeb8/IGVFFI0242JSKB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep9_S321_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3683VWLI/",
"accession": "IGVFFI3683VWLI",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:16:29.883962+00:00",
"file_format": "fastq",
"file_size": 11391191,
"href": "/sequence-files/IGVFFI3683VWLI/@@download/IGVFFI3683VWLI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/556bb4c0-b30c-4626-a2ed-6b70d8db16c3/IGVFFI3683VWLI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep2_S314_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9133MIOX/",
"accession": "IGVFFI9133MIOX",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:13:12.947350+00:00",
"file_format": "fastq",
"file_size": 8722688,
"href": "/sequence-files/IGVFFI9133MIOX/@@download/IGVFFI9133MIOX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/49e47219-d6ef-4f3f-9017-914cb0560a7f/IGVFFI9133MIOX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep9_S321_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6370OHKN/",
"accession": "IGVFFI6370OHKN",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:55:03.585492+00:00",
"file_format": "fastq",
"file_size": 1884742,
"href": "/sequence-files/IGVFFI6370OHKN/@@download/IGVFFI6370OHKN.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/9bcbe55a-a49d-4e9d-bf39-f3c7fa2aa778/IGVFFI6370OHKN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep5_S317_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3739XFPS/",
"accession": "IGVFFI3739XFPS",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:48:13.952215+00:00",
"file_format": "fastq",
"file_size": 2065079,
"href": "/sequence-files/IGVFFI3739XFPS/@@download/IGVFFI3739XFPS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/a9b7a49e-180b-4d30-bf01-d8a9037f2aff/IGVFFI3739XFPS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep1_S313_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0673DVOG/",
"accession": "IGVFFI0673DVOG",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:15:39.910265+00:00",
"file_format": "fastq",
"file_size": 11639871,
"href": "/sequence-files/IGVFFI0673DVOG/@@download/IGVFFI0673DVOG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/42cbdeb5-ae67-48af-9b07-10c693d57b42/IGVFFI0673DVOG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep1_S313_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1594RLYS/",
"accession": "IGVFFI1594RLYS",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:20:44.547506+00:00",
"file_format": "fastq",
"file_size": 10938378,
"href": "/sequence-files/IGVFFI1594RLYS/@@download/IGVFFI1594RLYS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/e36c2d83-f62d-47ae-af72-9367be88d69c/IGVFFI1594RLYS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep8_S320_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7130VZAO/",
"accession": "IGVFFI7130VZAO",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:51:04.807582+00:00",
"file_format": "fastq",
"file_size": 2010523,
"href": "/sequence-files/IGVFFI7130VZAO/@@download/IGVFFI7130VZAO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/444da9b8-7d28-43a9-a42c-74ab924f8f1c/IGVFFI7130VZAO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep5_S317_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8601GRVM/",
"accession": "IGVFFI8601GRVM",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:17:20.035852+00:00",
"file_format": "fastq",
"file_size": 11482728,
"href": "/sequence-files/IGVFFI8601GRVM/@@download/IGVFFI8601GRVM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0c872cae-8a7e-40d4-8d55-4c358b313d8c/IGVFFI8601GRVM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep3_S315_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5357MXXH/",
"accession": "IGVFFI5357MXXH",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:07:24.652609+00:00",
"file_format": "fastq",
"file_size": 9244147,
"href": "/sequence-files/IGVFFI5357MXXH/@@download/IGVFFI5357MXXH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/edfaf658-bad1-4551-8b0a-2a191dbb4d77/IGVFFI5357MXXH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep1_S313_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2394UNNV/",
"accession": "IGVFFI2394UNNV",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:52:59.604345+00:00",
"file_format": "fastq",
"file_size": 1957774,
"href": "/sequence-files/IGVFFI2394UNNV/@@download/IGVFFI2394UNNV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/27185bef-ced0-4307-a081-7ca83303ccd7/IGVFFI2394UNNV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep2_S314_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1118EWBM/",
"accession": "IGVFFI1118EWBM",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:57:42.238751+00:00",
"file_format": "fastq",
"file_size": 1890763,
"href": "/sequence-files/IGVFFI1118EWBM/@@download/IGVFFI1118EWBM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/3a441689-1388-482d-b178-a884e989867a/IGVFFI1118EWBM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep9_S321_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3605UGTT/",
"accession": "IGVFFI3605UGTT",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:52:20.154816+00:00",
"file_format": "fastq",
"file_size": 2099042,
"href": "/sequence-files/IGVFFI3605UGTT/@@download/IGVFFI3605UGTT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/d2c2e671-5b24-4d79-8fba-69f4ad6cad87/IGVFFI3605UGTT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep7_S319_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6093YBAZ/",
"accession": "IGVFFI6093YBAZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:09:48.620943+00:00",
"file_format": "fastq",
"file_size": 9121244,
"href": "/sequence-files/IGVFFI6093YBAZ/@@download/IGVFFI6093YBAZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/2321eb2c-80e6-4d96-8a16-4fc6f2ec6dd3/IGVFFI6093YBAZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep4_S316_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0963OPXG/",
"accession": "IGVFFI0963OPXG",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:51:42.283968+00:00",
"file_format": "fastq",
"file_size": 2117685,
"href": "/sequence-files/IGVFFI0963OPXG/@@download/IGVFFI0963OPXG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/4f36b5fb-8295-4696-bce5-7ddcb04c1791/IGVFFI0963OPXG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep6_S318_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3398EYGW/",
"accession": "IGVFFI3398EYGW",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:54:13.495914+00:00",
"file_format": "fastq",
"file_size": 1884062,
"href": "/sequence-files/IGVFFI3398EYGW/@@download/IGVFFI3398EYGW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/7212f2dd-74ce-4244-9a8d-53a8a8a35654/IGVFFI3398EYGW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep10_S322_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3070RDZQ/",
"accession": "IGVFFI3070RDZQ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:58:57.678965+00:00",
"file_format": "fastq",
"file_size": 1793210,
"href": "/sequence-files/IGVFFI3070RDZQ/@@download/IGVFFI3070RDZQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/96f4894b-2a88-4744-a5b5-859b6d3648a7/IGVFFI3070RDZQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep11_S323_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8589UWNL/",
"accession": "IGVFFI8589UWNL",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:56:23.096510+00:00",
"file_format": "fastq",
"file_size": 1928224,
"href": "/sequence-files/IGVFFI8589UWNL/@@download/IGVFFI8589UWNL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/e1dc793d-d6ec-43e5-acc7-42f6f2ee5cd5/IGVFFI8589UWNL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep7_S319_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8770XIYP/",
"accession": "IGVFFI8770XIYP",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:52:57.839932+00:00",
"file_format": "fastq",
"file_size": 1913616,
"href": "/sequence-files/IGVFFI8770XIYP/@@download/IGVFFI8770XIYP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/24fd5740-19e1-452e-ba6e-448f83cebbe3/IGVFFI8770XIYP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep8_S320_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9740OJZC/",
"accession": "IGVFFI9740OJZC",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:54:25.728621+00:00",
"file_format": "fastq",
"file_size": 1974213,
"href": "/sequence-files/IGVFFI9740OJZC/@@download/IGVFFI9740OJZC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/459a5d22-c594-4b55-8dab-6bc559eea9ae/IGVFFI9740OJZC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep4_S316_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5683NIXR/",
"accession": "IGVFFI5683NIXR",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:23:24.175557+00:00",
"file_format": "fastq",
"file_size": 10584495,
"href": "/sequence-files/IGVFFI5683NIXR/@@download/IGVFFI5683NIXR.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/409a2a6d-383b-4d12-8202-3dd59ef2c3f3/IGVFFI5683NIXR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep12_S324_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8301AKCU/",
"accession": "IGVFFI8301AKCU",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:10:30.191492+00:00",
"file_format": "fastq",
"file_size": 8770383,
"href": "/sequence-files/IGVFFI8301AKCU/@@download/IGVFFI8301AKCU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/93d9ce35-8ff5-4a14-a3c9-44d29e8b56cf/IGVFFI8301AKCU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep5_S317_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7795QKJJ/",
"accession": "IGVFFI7795QKJJ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:53:47.552409+00:00",
"file_format": "fastq",
"file_size": 1932108,
"href": "/sequence-files/IGVFFI7795QKJJ/@@download/IGVFFI7795QKJJ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/6cfac92b-587c-4849-a403-3fc0c8108f84/IGVFFI7795QKJJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep3_S315_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6226NROV/",
"accession": "IGVFFI6226NROV",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:49:49.960317+00:00",
"file_format": "fastq",
"file_size": 2014160,
"href": "/sequence-files/IGVFFI6226NROV/@@download/IGVFFI6226NROV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/7cb54596-6b33-49da-951f-7d4691da2e10/IGVFFI6226NROV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep3_S315_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0501JGMG/",
"accession": "IGVFFI0501JGMG",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:11:12.603057+00:00",
"file_format": "fastq",
"file_size": 9160806,
"href": "/sequence-files/IGVFFI0501JGMG/@@download/IGVFFI0501JGMG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ca54f193-2e19-48d3-ab47-14d92ef00969/IGVFFI0501JGMG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep6_S318_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4885ANSD/",
"accession": "IGVFFI4885ANSD",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:09:04.568560+00:00",
"file_format": "fastq",
"file_size": 8971897,
"href": "/sequence-files/IGVFFI4885ANSD/@@download/IGVFFI4885ANSD.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/9b07f9dc-2e2f-4db7-836f-586a48e1811a/IGVFFI4885ANSD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep3_S315_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3562UGCX/",
"accession": "IGVFFI3562UGCX",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:20:04.612851+00:00",
"file_format": "fastq",
"file_size": 11227431,
"href": "/sequence-files/IGVFFI3562UGCX/@@download/IGVFFI3562UGCX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/600e44a4-df99-4078-aead-f104e69b54ab/IGVFFI3562UGCX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep7_S319_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5176UXJE/",
"accession": "IGVFFI5176UXJE",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:15:10.800057+00:00",
"file_format": "fastq",
"file_size": 8321473,
"href": "/sequence-files/IGVFFI5176UXJE/@@download/IGVFFI5176UXJE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ef9a7e85-479f-4288-9ecd-98ecedae04b7/IGVFFI5176UXJE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep12_S324_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1028LFBE/",
"accession": "IGVFFI1028LFBE",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:49:02.660023+00:00",
"file_format": "fastq",
"file_size": 2113211,
"href": "/sequence-files/IGVFFI1028LFBE/@@download/IGVFFI1028LFBE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/e5b69809-10e4-4329-a261-ffb5122db184/IGVFFI1028LFBE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep2_S314_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0318GWBO/",
"accession": "IGVFFI0318GWBO",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:14:31.493975+00:00",
"file_format": "fastq",
"file_size": 8300243,
"href": "/sequence-files/IGVFFI0318GWBO/@@download/IGVFFI0318GWBO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/346c829d-e76d-4ef5-b728-f883b3d48b9d/IGVFFI0318GWBO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep11_S323_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0794PHCL/",
"accession": "IGVFFI0794PHCL",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:22:44.354935+00:00",
"file_format": "fastq",
"file_size": 10342843,
"href": "/sequence-files/IGVFFI0794PHCL/@@download/IGVFFI0794PHCL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/78b674bd-dae0-491f-b1b1-e56f110aff4a/IGVFFI0794PHCL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep11_S323_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1499PCQB/",
"accession": "IGVFFI1499PCQB",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:54:51.156986+00:00",
"file_format": "fastq",
"file_size": 1891679,
"href": "/sequence-files/IGVFFI1499PCQB/@@download/IGVFFI1499PCQB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/49820fa5-bed5-4413-9d21-77f3a7387dc8/IGVFFI1499PCQB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep11_S323_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4630DQJD/",
"accession": "IGVFFI4630DQJD",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:18:03.949694+00:00",
"file_format": "fastq",
"file_size": 11440330,
"href": "/sequence-files/IGVFFI4630DQJD/@@download/IGVFFI4630DQJD.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/18cca7c0-fe60-4dd6-81c7-ae9d816b5232/IGVFFI4630DQJD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep4_S316_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6581YWEB/",
"accession": "IGVFFI6581YWEB",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:52:12.437409+00:00",
"file_format": "fastq",
"file_size": 1984275,
"href": "/sequence-files/IGVFFI6581YWEB/@@download/IGVFFI6581YWEB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8772511d-c254-4cdc-b389-18b390c54c6d/IGVFFI6581YWEB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep1_S313_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6611WMMZ/",
"accession": "IGVFFI6611WMMZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:13:52.665529+00:00",
"file_format": "fastq",
"file_size": 8052761,
"href": "/sequence-files/IGVFFI6611WMMZ/@@download/IGVFFI6611WMMZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ddb6d8ed-f51e-4744-85f6-8d72a49ffd98/IGVFFI6611WMMZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep10_S322_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2441TLMB/",
"accession": "IGVFFI2441TLMB",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:50:27.600551+00:00",
"file_format": "fastq",
"file_size": 2212083,
"href": "/sequence-files/IGVFFI2441TLMB/@@download/IGVFFI2441TLMB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/9c5d3a01-8733-4cf8-bc15-3ff855feb2b8/IGVFFI2441TLMB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep4_S316_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3311DACT/",
"accession": "IGVFFI3311DACT",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:55:45.330277+00:00",
"file_format": "fastq",
"file_size": 1976896,
"href": "/sequence-files/IGVFFI3311DACT/@@download/IGVFFI3311DACT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/51747b4f-64c6-4c40-8cb0-0a24da1a5e5b/IGVFFI3311DACT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep6_S318_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3479SGDW/",
"accession": "IGVFFI3479SGDW",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:53:35.669103+00:00",
"file_format": "fastq",
"file_size": 1978366,
"href": "/sequence-files/IGVFFI3479SGDW/@@download/IGVFFI3479SGDW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/d0186952-ae54-440f-ab84-636cd2ccfa25/IGVFFI3479SGDW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep9_S321_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4337UZYQ/",
"accession": "IGVFFI4337UZYQ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:55:28.979080+00:00",
"file_format": "fastq",
"file_size": 1831494,
"href": "/sequence-files/IGVFFI4337UZYQ/@@download/IGVFFI4337UZYQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/14b12e53-b8dd-44eb-83ac-18c1af589bd8/IGVFFI4337UZYQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep12_S324_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2899LEMP/",
"accession": "IGVFFI2899LEMP",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:57:03.730642+00:00",
"file_format": "fastq",
"file_size": 1877300,
"href": "/sequence-files/IGVFFI2899LEMP/@@download/IGVFFI2899LEMP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/cbe5e077-1843-45fd-92b1-07e0b264d91d/IGVFFI2899LEMP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep8_S320_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2613DCAO/",
"accession": "IGVFFI2613DCAO",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:22:04.758946+00:00",
"file_format": "fastq",
"file_size": 10122919,
"href": "/sequence-files/IGVFFI2613DCAO/@@download/IGVFFI2613DCAO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/03015839-bf17-4595-89a1-309620096acc/IGVFFI2613DCAO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep10_S322_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1350LNYJ/",
"accession": "IGVFFI1350LNYJ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:18:44.193813+00:00",
"file_format": "fastq",
"file_size": 11106740,
"href": "/sequence-files/IGVFFI1350LNYJ/@@download/IGVFFI1350LNYJ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/22cf411f-ecea-41ba-af41-c0c1b90cace1/IGVFFI1350LNYJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep5_S317_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4789BDNT/",
"accession": "IGVFFI4789BDNT",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:19:24.402981+00:00",
"file_format": "fastq",
"file_size": 11675217,
"href": "/sequence-files/IGVFFI4789BDNT/@@download/IGVFFI4789BDNT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/627b33af-72e1-4815-b065-1d1077f1bfe8/IGVFFI4789BDNT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep6_S318_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4377YQQR/",
"accession": "IGVFFI4377YQQR",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:58:20.095192+00:00",
"file_format": "fastq",
"file_size": 1749974,
"href": "/sequence-files/IGVFFI4377YQQR/@@download/IGVFFI4377YQQR.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/d55e5ed3-b6c0-4bf6-8072-e3559499414d/IGVFFI4377YQQR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep10_S322_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4436PDOZ/",
"accession": "IGVFFI4436PDOZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:11:52.752891+00:00",
"file_format": "fastq",
"file_size": 8952297,
"href": "/sequence-files/IGVFFI4436PDOZ/@@download/IGVFFI4436PDOZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/6c8e77e9-e6ca-42d0-a30e-10059ea6c98e/IGVFFI4436PDOZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep7_S319_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5062TFTZ/",
"accession": "IGVFFI5062TFTZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:12:33.214747+00:00",
"file_format": "fastq",
"file_size": 8662610,
"href": "/sequence-files/IGVFFI5062TFTZ/@@download/IGVFFI5062TFTZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/91e9cc5c-6e91-421d-a267-2632bf058fb8/IGVFFI5062TFTZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep2-FFRep3_BinC-PCRrep8_S320_R1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4359OODY/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:07:52.269795+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM0890ULSF/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0890ULSF",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS2385DHZO/",
"accession": "IGVFDS2385DHZO",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-13T09:07:24.652609+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "0aa9734d-678e-48de-9595-1ac94071e7db"
}