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INDEXED
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MeasurementSet
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IGVFDS0821GFDR
IGVFDS0821GFDR
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP026_G1_RNA
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0286WZWD
fastq
reads
I2
1
Illumina NovaSeq X
19UBCA4LE
5
954 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0950PCSG
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
19UBCA4LE
5
10 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1445XPUZ
fastq
reads
I1
1
Illumina NovaSeq X
19UBCA4LE
5
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3060MYZT
fastq
reads
I1
1
Illumina NovaSeq X
19UBCA4LE
6
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7079REPZ
fastq
reads
I2
1
Illumina NovaSeq X
19UBCA4LE
6
994 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI8461HYWQ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19UBCA4LE
6
14 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI8727DVDT
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
19UBCA4LE
6
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9113XKCN
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19UBCA4LE
5
14 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM0921NWYJ
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples
Donors
8 items
Accession
Aliases
Sex
Taxa
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO4053HEKW
igvf:corces_donor_BANN1317
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO5718REZU
igvf:corces_donor_BANN9926
female
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO7678VYKP
igvf:corces_donor_BANN1235
male
Homo sapiens
IGVFDO7815RLQM
igvf:corces_donor_BANN1504
female
Homo sapiens
IGVFDO9211DWXZ
igvf:corces_donor_BANN1352
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0577OKVB
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP026_G1_ATAC
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF