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INDEXED
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MeasurementSet
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IGVFDS0802QULQ
IGVFDS0802QULQ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP006_G4_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0957WJZR
fastq
reads
I1
1
Illumina NovaSeq X
223JGVLT3
4
452 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1511HFQL
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JGVLT3
3
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1522NLOY
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JGVLT3
3
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2672HMGU
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JGVLT3
2
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2960EOHS
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JGVLT3
2
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2993PQDY
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JGVLT3
4
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3416DGYJ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JGVLT3
3
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3980LEWX
fastq
reads
I1
1
Illumina NovaSeq X
223JGVLT3
2
462 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4380QBSC
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JGVLT3
1
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4833SCXV
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JGVLT3
1
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM9866POVO
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1278CNID
igvf:corces_donor_BANN1506
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO5718REZU
igvf:corces_donor_BANN9926
female
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO7754VJKM
igvf:corces_donor_BANN0341
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3171AYJR
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP006_G4_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF