Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS0737RQRG
IGVFDS0737RQRG
preview
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP015_G4_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1131GHTS
fastq
reads
I1
1
Illumina NovaSeq X
2257VGLT3
4
484 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1165XCSU
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
3
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1177ABSA
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2257VGLT3
1
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1439FXPM
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
2
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1944JTDQ
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
2257VGLT3
3
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1977JCJB
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2257VGLT3
2
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3671JCXX
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2257VGLT3
3
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4806HXYE
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
1
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5159SOTJ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
2257VGLT3
4
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5527NFOG
fastq
reads
I1
1
Illumina NovaSeq X
2257VGLT3
3
486 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM0218TRNG
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0698ZMAQ
igvf:corces_donor_BANN1569
male
Homo sapiens
IGVFDO2928PSUK
igvf:corces_donor_BANN0950
male
Homo sapiens
IGVFDO3471KCPD
igvf:corces_donor_BANN1647
male
Homo sapiens
IGVFDO3500WGWY
igvf:corces_donor_BANN1083
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4170HAEN
igvf:corces_donor_BANN1864
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO5912PIZP
igvf:corces_donor_BANN1830
female
Homo sapiens
IGVFDO7109IWDJ
igvf:corces_donor_BANN2005
male
Homo sapiens
IGVFDO7606UOXI
igvf:corces_donor_BANN1570
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7340HYVJ
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP015_G4_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF