Home
Home
Search (⌘K or ⌃K)
Data
Resources / Standards
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS0730EKEW
IGVFDS0730EKEW
released
Json view
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples
Protocols
https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-dm6gp3zedvzp/v2
https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-kxygx396zg8j/v2
https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1
https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1
Aliases
ali-mortazavi:004_67L_illumina
Attribution
Ali Mortazavi, UCI
(
HG012077
—
Ali Mortazavi
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1050RNRE
fastq
reads
R1
4
Read 1
IGVFFI9444ARGF
Illumina NovaSeq 6000
HTH33DSX5
4
13 GB
Ali Mortazavi, UCI
validated
IGVFFI1104VUJL
fastq
reads
R2
7
Read 2
IGVFFI7002CEWU
Illumina NovaSeq 6000
HTGM5DSX5
3
6.6 GB
Ali Mortazavi, UCI
validated
IGVFFI1220OWPR
fastq
reads
R1
2
Read 1
IGVFFI3790TQUO
Illumina NovaSeq 6000
HTH33DSX5
2
13 GB
Ali Mortazavi, UCI
validated
IGVFFI1350EWAX
fastq
reads
R1
5
Read 1
IGVFFI7786YLUT
Illumina NovaSeq 6000
HTGM5DSX5
1
12 GB
Ali Mortazavi, UCI
validated
IGVFFI1422IYYU
fastq
reads
R1
1
Read 1
IGVFFI7338UNNB
Illumina NovaSeq 6000
HTH33DSX5
1
13 GB
Ali Mortazavi, UCI
validated
IGVFFI1961YBUX
fastq
reads
R2
4
Read 2
IGVFFI9444ARGF
Illumina NovaSeq 6000
HTH33DSX5
4
6.7 GB
Ali Mortazavi, UCI
validated
IGVFFI2858PUIB
fastq
reads
R1
3
Read 1
IGVFFI7497COIE
Illumina NovaSeq 6000
HTH33DSX5
3
13 GB
Ali Mortazavi, UCI
validated
IGVFFI3866QPFJ
fastq
reads
R2
1
Read 2
IGVFFI7338UNNB
Illumina NovaSeq 6000
HTH33DSX5
1
6.8 GB
Ali Mortazavi, UCI
validated
IGVFFI5363ZJWL
fastq
reads
R2
5
Read 2
IGVFFI7786YLUT
Illumina NovaSeq 6000
HTGM5DSX5
1
6.6 GB
Ali Mortazavi, UCI
validated
IGVFFI5572BNZQ
fastq
reads
R2
8
Read 2
IGVFFI0707LWTE
Illumina NovaSeq 6000
HTGM5DSX5
4
6.6 GB
Ali Mortazavi, UCI
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6852ELFT
MultiplexedSample
heart
,
liver
multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples
Donors
64 items
1
2
3
4
5
6
7
Accession
Aliases
Sex
Taxa
IGVFDO0026YRCR
ali-mortazavi:018_B6J_10F
female
Mus musculus
IGVFDO0430HQIU
ali-mortazavi:041_129S1J_10M
male
Mus musculus
IGVFDO0624KKTV
ali-mortazavi:030_AJ_10F
female
Mus musculus
IGVFDO0681EHNP
ali-mortazavi:052_NZOJ_10F
female
Mus musculus
IGVFDO0696DMIA
ali-mortazavi:057_WSBJ_10M
male
Mus musculus
IGVFDO0751WQHI
ali-mortazavi:080_PWKJ_10F
female
Mus musculus
IGVFDO0813DZTW
ali-mortazavi:069_NODJ_10M
male
Mus musculus
IGVFDO0853BCOL
ali-mortazavi:058_WSBJ_10F
female
Mus musculus
IGVFDO1452VDIT
ali-mortazavi:035_AJ_10M
male
Mus musculus
IGVFDO1477BPVO
ali-mortazavi:088_CASTJ_10F
female
Mus musculus
Assay Details
Sequencing Library Types
mRNA enriched
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9131LBWZ
AnalysisSet
Parse SPLiT-seq
ali-mortazavi:igvf_004_Subpool_13_total+core
Ali Mortazavi, UCI