{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0729LSNF",
"aliases": [
"buenrostro-bernstein:scRNA Lib 840"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Tissue [IGVFSM9407UDAJ](/tissues/IGVFSM9407UDAJ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM9407UDAJ/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000646/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS0729LSNF](/measurement-sets/IGVFDS0729LSNF/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS0729LSNF/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS0729LSNF](/measurement-sets/IGVFDS0729LSNF/) has in progress subobject tabular file [IGVFFI6680XCDT](/tabular-files/IGVFFI6680XCDT/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS0729LSNF/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS0729LSNF](/measurement-sets/IGVFDS0729LSNF/) has in progress subobject tabular file [IGVFFI2668ZFEB](/tabular-files/IGVFFI2668ZFEB/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS0729LSNF/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS0729LSNF](/measurement-sets/IGVFDS0729LSNF/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS0729LSNF/"
}
],
"WARNING": [
{
"category": "missing age",
"detail": "Tissue [IGVFSM9407UDAJ](/tissues/IGVFSM9407UDAJ/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/tissues/IGVFSM9407UDAJ/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
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"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"creation_timestamp": "2025-03-05T15:34:06.154653+00:00",
"data_use_limitation_summaries": [
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],
"donors": [
{
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"accession": "IGVFDO3508PMXX",
"aliases": [
"ali-mortazavi:768_B6J_10F",
"buenrostro-bernstein:Donor 2078"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
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{
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"aliases": [
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],
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"creation_timestamp": "2025-03-05T15:55:28.605044+00:00",
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},
{
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],
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},
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},
{
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],
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},
{
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],
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"creation_timestamp": "2025-03-05T15:55:10.264700+00:00",
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},
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},
{
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],
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{
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},
{
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],
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},
{
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],
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},
{
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}
],
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],
"lab": {
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"title": "Jason Buenrostro, Broad"
},
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],
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{
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}
],
"release_timestamp": "2025-03-28T21:22:08.637755+00:00",
"samples": [
{
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"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9407UDAJ",
"aliases": [
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],
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],
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{
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],
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}
],
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"taxa": "Mus musculus"
}
],
"schema_version": "26",
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"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "d4942cd1-65a6-4614-9662-c689c498c7df"
}