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MeasurementSet
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IGVFDS0688NEEC
IGVFDS0688NEEC
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP029_G8_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0351ZASX
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
22F3GTLT3
5
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0840GZNP
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
22F3GTLT3
4
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0939CCNQ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
22F3GTLT3
5
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1073KOXD
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
22F3GTLT3
5
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1946YQYQ
fastq
reads
I1
1
Illumina NovaSeq X
22F3GTLT3
5
504 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2694WTLE
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
22F3GTLT3
3
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3800ZRWQ
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
22F3GTLT3
6
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3885UQGH
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
22F3GTLT3
6
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3914HYUY
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
22F3GTLT3
4
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4344ZIKL
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
22F3GTLT3
6
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM9143IXZW
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples
Donors
8 items
Accession
Aliases
Sex
Taxa
IGVFDO5214IKNF
igvf:corces_donor_BANN1070
male
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7754VJKM
igvf:corces_donor_BANN0341
male
Homo sapiens
IGVFDO8800RKVB
igvf:corces_donor_BANN1872
female
Homo sapiens
IGVFDO9211DWXZ
igvf:corces_donor_BANN1352
female
Homo sapiens
IGVFDO9236YUAT
igvf:corces_donor_BANN0227
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4046FPTG
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP029_G8_RNA
Ryan Corces, Gladstone Institute UCSF