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IGVFDS0681XTSI

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples
Protocols
Aliases
ansuman-satpathy:snATAC-seq_igvf13_10x3

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
R2
1
Barcode index
22JL3GLT3
1
5.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
22JL3GLT3
3
9.4 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
22JL3GLT3
1
9.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
22JL3GLT3
2
9.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
22JL3GLT3
3
9.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
22JL3GLT3
2
9.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22JL3GLT3
3
2.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
22JL3GLT3
2
5.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
22JL3GLT3
1
2.0 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
22JL3GLT3
1
9.3 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples

Donors

4 items
Aliases
  • thomas-quertermous:LAD_multiome_donor2
female
Homo sapiens
  • thomas-quertermous:LAD_multiome_donor1
male
Homo sapiens
  • thomas-quertermous:LAD_multiome_donor3
female
Homo sapiens
  • thomas-quertermous:LAD_multiome_donor4
male
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf13_analysis_set_10x3
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf13_10x3
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf13_10x3
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford