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IGVFDS0668NWBP

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
Protocols
Aliases
ansuman-satpathy:snATAC-seq_igvf11_10x2

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R3
1
Read 2
225L7NLT3
2
7.5 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
2257FHLT3
8
5.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
2257FHLT3
8
10 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
2257FHLT3
8
10 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225L7NLT3
2
1.7 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
2257FHLT3
7
10 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
225L7NLT3
1
7.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
225L7NLT3
1
7.4 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225L7NLT3
1
1.7 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
2257FHLT3
7
5.5 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples

Donors

2 items
Aliases
  • igvf:donor_of_WTC11
male
Homo sapiens
  • igvf:donor_of_h7
female
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf11_analysis_set
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf11_10x2
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf11_10x2
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford