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IGVFDS0646FGSI
IGVFDS0646FGSI
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP006_G7_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0987CCRE
fastq
reads
I2
2
Illumina NovaSeq X
225LGWLT3
4
339 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1138GAAK
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JHVLT3
8
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2187HZUJ
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
225LGWLT3
3
2.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2287GNYS
fastq
reads
I1
2
Illumina NovaSeq X
225LGWLT3
4
384 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3047YFIL
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JHVLT3
7
2.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3739BVAJ
fastq
reads
I2
1
Illumina NovaSeq X
223JHVLT3
8
289 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3993YZRQ
fastq
reads
I1
2
Illumina NovaSeq X
225LGWLT3
3
375 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4284MPKK
fastq
reads
I2
2
Illumina NovaSeq X
225LGWLT3
3
331 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4676XOLI
fastq
reads
I2
1
Illumina NovaSeq X
223JHVLT3
7
312 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4678LQOD
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JHVLT3
8
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6003RYZR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1278CNID
igvf:corces_donor_BANN1506
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO5718REZU
igvf:corces_donor_BANN9926
female
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO7754VJKM
igvf:corces_donor_BANN0341
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0299PZQV
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP006_G7_ATAC
Ryan Corces, Gladstone Institute UCSF