Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS0624REZE
IGVFDS0624REZE
preview
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X043_G8_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0045JHCO
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJTLT3
5
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0250ZLCT
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JJTLT3
7
932 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0909QGCD
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JJTLT3
7
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1758OKWH
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JJTLT3
5
884 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3507BRWA
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJTLT3
8
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3822QLXB
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JJTLT3
6
876 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4312KGTK
fastq
reads
I1
1
Illumina NovaSeq X
223JJTLT3
8
384 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4819AOUL
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JJTLT3
8
912 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5263KWBI
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JJTLT3
8
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5569EZWD
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JJTLT3
6
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM9265WOCK
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0180JQCL
igvf:corces_donor_BANN1344
female
Homo sapiens
IGVFDO0773NPOH
igvf:corces_donor_BANN0560
male
Homo sapiens
IGVFDO3497MBPK
igvf:corces_donor_BANN0002
male
Homo sapiens
IGVFDO3501RYHX
igvf:corces_donor_BANN1959
male
Homo sapiens
IGVFDO5949WFOO
igvf:corces_donor_BANN1957
male
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO6837RJUQ
igvf:corces_donor_BANN1201
male
Homo sapiens
IGVFDO7315DYIP
igvf:corces_donor_BANN1089
female
Homo sapiens
IGVFDO8547HLIG
igvf:corces_donor_BANN1812
female
Homo sapiens
IGVFDO8584FBOT
igvf:corces_donor_BANN0315
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1061DPBM
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X043_G8_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF