{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS0595OBOA/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0595OBOA",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM4893GPVV](/in-vitro-systems/IGVFSM4893GPVV/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM4893GPVV/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS0595OBOA](/measurement-sets/IGVFDS0595OBOA/) has sequence file(s) [IGVFFI7893OAAA](/sequence-files/IGVFFI7893OAAA/), [IGVFFI5932ENNC](/sequence-files/IGVFFI5932ENNC/), [IGVFFI5316QIUX](/sequence-files/IGVFFI5316QIUX/), [IGVFFI2303GWMJ](/sequence-files/IGVFFI2303GWMJ/), [IGVFFI8972TMMD](/sequence-files/IGVFFI8972TMMD/), [IGVFFI5709UQBE](/sequence-files/IGVFFI5709UQBE/), [IGVFFI2465UXYE](/sequence-files/IGVFFI2465UXYE/), [IGVFFI5139YEUZ](/sequence-files/IGVFFI5139YEUZ/), [IGVFFI8067ILTA](/sequence-files/IGVFFI8067ILTA/), [IGVFFI1562DSMD](/sequence-files/IGVFFI1562DSMD/), [IGVFFI0755EFIB](/sequence-files/IGVFFI0755EFIB/), [IGVFFI4551NIEK](/sequence-files/IGVFFI4551NIEK/), [IGVFFI3897LUSJ](/sequence-files/IGVFFI3897LUSJ/), [IGVFFI1490XWNF](/sequence-files/IGVFFI1490XWNF/), [IGVFFI2195KDOM](/sequence-files/IGVFFI2195KDOM/), [IGVFFI8952ZDMH](/sequence-files/IGVFFI8952ZDMH/), [IGVFFI6281HWPB](/sequence-files/IGVFFI6281HWPB/), [IGVFFI9173DQSG](/sequence-files/IGVFFI9173DQSG/), [IGVFFI3737WUMM](/sequence-files/IGVFFI3737WUMM/), [IGVFFI2180YRNU](/sequence-files/IGVFFI2180YRNU/), [IGVFFI8315JDIR](/sequence-files/IGVFFI8315JDIR/), [IGVFFI8504HKOE](/sequence-files/IGVFFI8504HKOE/), [IGVFFI9175PZYF](/sequence-files/IGVFFI9175PZYF/), [IGVFFI7296ABQX](/sequence-files/IGVFFI7296ABQX/), [IGVFFI9402WGFC](/sequence-files/IGVFFI9402WGFC/), [IGVFFI9572VVCE](/sequence-files/IGVFFI9572VVCE/), [IGVFFI0116FTMZ](/sequence-files/IGVFFI0116FTMZ/), [IGVFFI2341QUEX](/sequence-files/IGVFFI2341QUEX/), [IGVFFI1579LBGJ](/sequence-files/IGVFFI1579LBGJ/), [IGVFFI2533RTEK](/sequence-files/IGVFFI2533RTEK/), [IGVFFI0201HMLK](/sequence-files/IGVFFI0201HMLK/), [IGVFFI8898DYAB](/sequence-files/IGVFFI8898DYAB/), [IGVFFI1186MENK](/sequence-files/IGVFFI1186MENK/), [IGVFFI6877PUCW](/sequence-files/IGVFFI6877PUCW/), [IGVFFI4285PDQM](/sequence-files/IGVFFI4285PDQM/), [IGVFFI6409LIKI](/sequence-files/IGVFFI6409LIKI/), [IGVFFI0271OWCU](/sequence-files/IGVFFI0271OWCU/), [IGVFFI9706ZNBC](/sequence-files/IGVFFI9706ZNBC/), [IGVFFI0470AMOB](/sequence-files/IGVFFI0470AMOB/), [IGVFFI0299PRHE](/sequence-files/IGVFFI0299PRHE/), [IGVFFI3515VQWV](/sequence-files/IGVFFI3515VQWV/), [IGVFFI8202YCKI](/sequence-files/IGVFFI8202YCKI/), [IGVFFI6214RUQQ](/sequence-files/IGVFFI6214RUQQ/), [IGVFFI7859JTGD](/sequence-files/IGVFFI7859JTGD/), [IGVFFI2446OVLW](/sequence-files/IGVFFI2446OVLW/), [IGVFFI5248HHSM](/sequence-files/IGVFFI5248HHSM/), [IGVFFI2811QOMX](/sequence-files/IGVFFI2811QOMX/), [IGVFFI8074JBCF](/sequence-files/IGVFFI8074JBCF/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS0595OBOA/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0595OBOA](/measurement-sets/IGVFDS0595OBOA/) has sequence file(s): [IGVFFI7893OAAA](/sequence-files/IGVFFI7893OAAA/), [IGVFFI5932ENNC](/sequence-files/IGVFFI5932ENNC/), [IGVFFI5316QIUX](/sequence-files/IGVFFI5316QIUX/), [IGVFFI2303GWMJ](/sequence-files/IGVFFI2303GWMJ/), [IGVFFI8972TMMD](/sequence-files/IGVFFI8972TMMD/), [IGVFFI5709UQBE](/sequence-files/IGVFFI5709UQBE/), [IGVFFI2465UXYE](/sequence-files/IGVFFI2465UXYE/), [IGVFFI5139YEUZ](/sequence-files/IGVFFI5139YEUZ/), [IGVFFI8067ILTA](/sequence-files/IGVFFI8067ILTA/), [IGVFFI1562DSMD](/sequence-files/IGVFFI1562DSMD/), [IGVFFI0755EFIB](/sequence-files/IGVFFI0755EFIB/), [IGVFFI4551NIEK](/sequence-files/IGVFFI4551NIEK/), [IGVFFI3897LUSJ](/sequence-files/IGVFFI3897LUSJ/), [IGVFFI1490XWNF](/sequence-files/IGVFFI1490XWNF/), [IGVFFI2195KDOM](/sequence-files/IGVFFI2195KDOM/), [IGVFFI8952ZDMH](/sequence-files/IGVFFI8952ZDMH/), [IGVFFI6281HWPB](/sequence-files/IGVFFI6281HWPB/), [IGVFFI9173DQSG](/sequence-files/IGVFFI9173DQSG/), [IGVFFI3737WUMM](/sequence-files/IGVFFI3737WUMM/), [IGVFFI2180YRNU](/sequence-files/IGVFFI2180YRNU/), [IGVFFI8315JDIR](/sequence-files/IGVFFI8315JDIR/), [IGVFFI8504HKOE](/sequence-files/IGVFFI8504HKOE/), [IGVFFI9175PZYF](/sequence-files/IGVFFI9175PZYF/), [IGVFFI7296ABQX](/sequence-files/IGVFFI7296ABQX/), [IGVFFI9402WGFC](/sequence-files/IGVFFI9402WGFC/), [IGVFFI9572VVCE](/sequence-files/IGVFFI9572VVCE/), [IGVFFI0116FTMZ](/sequence-files/IGVFFI0116FTMZ/), [IGVFFI2341QUEX](/sequence-files/IGVFFI2341QUEX/), [IGVFFI1579LBGJ](/sequence-files/IGVFFI1579LBGJ/), [IGVFFI2533RTEK](/sequence-files/IGVFFI2533RTEK/), [IGVFFI0201HMLK](/sequence-files/IGVFFI0201HMLK/), [IGVFFI8898DYAB](/sequence-files/IGVFFI8898DYAB/), [IGVFFI1186MENK](/sequence-files/IGVFFI1186MENK/), [IGVFFI6877PUCW](/sequence-files/IGVFFI6877PUCW/), [IGVFFI4285PDQM](/sequence-files/IGVFFI4285PDQM/), [IGVFFI6409LIKI](/sequence-files/IGVFFI6409LIKI/), [IGVFFI0271OWCU](/sequence-files/IGVFFI0271OWCU/), [IGVFFI9706ZNBC](/sequence-files/IGVFFI9706ZNBC/), [IGVFFI0470AMOB](/sequence-files/IGVFFI0470AMOB/), [IGVFFI0299PRHE](/sequence-files/IGVFFI0299PRHE/), [IGVFFI3515VQWV](/sequence-files/IGVFFI3515VQWV/), [IGVFFI8202YCKI](/sequence-files/IGVFFI8202YCKI/), [IGVFFI6214RUQQ](/sequence-files/IGVFFI6214RUQQ/), [IGVFFI7859JTGD](/sequence-files/IGVFFI7859JTGD/), [IGVFFI2446OVLW](/sequence-files/IGVFFI2446OVLW/), [IGVFFI5248HHSM](/sequence-files/IGVFFI5248HHSM/), [IGVFFI2811QOMX](/sequence-files/IGVFFI2811QOMX/), [IGVFFI8074JBCF](/sequence-files/IGVFFI8074JBCF/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0595OBOA/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS0595OBOA](/measurement-sets/IGVFDS0595OBOA/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS0595OBOA/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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],
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}
],
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{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "9294f0be-c60c-45ef-b177-3b9616138751"
}