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IGVFDS0584KNPT

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Protocols
Aliases
ansuman-satpathy:snATAC-seq_igvf12_10x5

Sequencing Results (Illumina)

28 items
Read Names
fastq
reads
R2
1
Barcode index
225JTGLT3
5
3.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
225JTGLT3
4
5.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225JTGLT3
8
1.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225JTGLT3
7
1.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
225JTGLT3
8
5.7 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
225JTGLT3
8
3.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
225JTGLT3
3
3.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
225JTGLT3
7
5.7 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
225JTGLT3
3
1.3 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
225JTGLT3
3
5.6 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Donors

3 items
Aliases
  • ansuman-satpathy:singh_bcell_donor_2
female
Homo sapiens
  • ansuman-satpathy:bridge_bone_marrow_donor_2038
male
Homo sapiens
  • ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf12_analysis_set_10x5
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf12_10x5
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf12_10x5
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford