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MeasurementSet
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IGVFDS0571RKTK
IGVFDS0571RKTK
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP001_G3_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0864CDSR
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
2
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1252LWLU
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
3
677 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1548KWMB
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
4
230 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2008XKNT
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
4
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3303DVFL
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
3
220 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3851AIKH
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
1
588 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4016GWCP
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
1
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4833UTUF
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
3
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5268MWYQ
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
2
204 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5354PDBJ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
2
607 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM8767PGTT
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6316TGCK
igvf:corces_donor_BANN1814
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3379JUSL
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP001_G3_ATAC
Ryan Corces, Gladstone Institute UCSF