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MeasurementSet
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IGVFDS0559WMGB
IGVFDS0559WMGB
preview
GRU
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-cell RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens umbilical cord blood cell; ... and 12 more samples
Protocols
https://www.protocols.io/view/parse-evercode-wt-v2-0-1-protocol-university-of-mi-rm7vzbzx2vx1/v1
Aliases
maya-kasowski:Parse_P2_scRNA
Attribution
Maya Kasowski, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
32 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0016JZYO
fastq
reads
R2
8
Read 2
Illumina NovaSeq X Plus
2
6.2 GB
Maya Kasowski, Stanford
validated
IGVFFI0066OTMI
fastq
reads
R2
6
Read 2
Illumina NovaSeq X Plus
1
14 GB
Maya Kasowski, Stanford
validated
IGVFFI0085GQEP
fastq
reads
R2
6
Read 2
Illumina NovaSeq X Plus
2
11 GB
Maya Kasowski, Stanford
validated
IGVFFI0121SSXY
fastq
reads
R1
1
Read 1
Illumina NovaSeq X Plus
1
11 GB
Maya Kasowski, Stanford
validated
IGVFFI0547JQCO
fastq
reads
R1
3
Read 1
Illumina NovaSeq X Plus
2
6.9 GB
Maya Kasowski, Stanford
validated
IGVFFI1272GYFL
fastq
reads
R1
1
Read 1
Illumina NovaSeq X Plus
2
8.6 GB
Maya Kasowski, Stanford
validated
IGVFFI1300PPWH
fastq
reads
R1
4
Read 1
Illumina NovaSeq X Plus
2
9.3 GB
Maya Kasowski, Stanford
validated
IGVFFI1849DEZW
fastq
reads
R2
1
Read 2
Illumina NovaSeq X Plus
2
11 GB
Maya Kasowski, Stanford
validated
IGVFFI2261JRHK
fastq
reads
R1
4
Read 1
Illumina NovaSeq X Plus
1
12 GB
Maya Kasowski, Stanford
validated
IGVFFI2369VLZV
fastq
reads
R1
6
Read 1
Illumina NovaSeq X Plus
1
11 GB
Maya Kasowski, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4252CQLW
MultiplexedSample
bone marrow
,
umbilical cord blood
multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens umbilical cord blood cell; ... and 12 more samples
Donors
14 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0516IWTA
maya-kasowski:donor_control4
unspecified
Homo sapiens
IGVFDO1210OZHC
maya-kasowski:donor_control3
unspecified
Homo sapiens
IGVFDO1836DUYP
maya-kasowski:donor_4089
unspecified
Homo sapiens
IGVFDO2788XNBM
maya-kasowski:donor_4048
unspecified
Homo sapiens
IGVFDO3006RCEY
maya-kasowski:donor_4271
unspecified
Homo sapiens
IGVFDO3010QRAU
maya-kasowski:donor_4111
female
Homo sapiens
IGVFDO3765EKDF
maya-kasowski:donor_control2
unspecified
Homo sapiens
IGVFDO4373FEUT
maya-kasowski:donor_4120
unspecified
Homo sapiens
IGVFDO4458ECNK
maya-kasowski:donor_control1
unspecified
Homo sapiens
IGVFDO4733WBSW
maya-kasowski:donor_4083
unspecified
Homo sapiens