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MeasurementSet
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IGVFDS0559WMGB
IGVFDS0559WMGB
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-cell RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens umbilical cord blood cell; ... and 12 more samples
Protocols
https://www.protocols.io/view/parse-evercode-wt-v2-0-1-protocol-university-of-mi-rm7vzbzx2vx1/v1
Aliases
maya-kasowski:Parse_P2_scRNA
Attribution
Maya Kasowski, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
32 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0016JZYO
fastq
reads
R2
8
Read 2
Illumina NovaSeq X Plus
2
6.2 GB
Maya Kasowski, Stanford
validated
IGVFFI0066OTMI
fastq
reads
R2
6
Read 2
Illumina NovaSeq X Plus
1
14 GB
Maya Kasowski, Stanford
validated
IGVFFI0085GQEP
fastq
reads
R2
6
Read 2
Illumina NovaSeq X Plus
2
11 GB
Maya Kasowski, Stanford
validated
IGVFFI0121SSXY
fastq
reads
R1
1
Read 1
Illumina NovaSeq X Plus
1
11 GB
Maya Kasowski, Stanford
validated
IGVFFI0547JQCO
fastq
reads
R1
3
Read 1
Illumina NovaSeq X Plus
2
6.9 GB
Maya Kasowski, Stanford
validated
IGVFFI1272GYFL
fastq
reads
R1
1
Read 1
Illumina NovaSeq X Plus
2
8.6 GB
Maya Kasowski, Stanford
validated
IGVFFI1300PPWH
fastq
reads
R1
4
Read 1
Illumina NovaSeq X Plus
2
9.3 GB
Maya Kasowski, Stanford
validated
IGVFFI1849DEZW
fastq
reads
R2
1
Read 2
Illumina NovaSeq X Plus
2
11 GB
Maya Kasowski, Stanford
validated
IGVFFI2261JRHK
fastq
reads
R1
4
Read 1
Illumina NovaSeq X Plus
1
12 GB
Maya Kasowski, Stanford
validated
IGVFFI2369VLZV
fastq
reads
R1
6
Read 1
Illumina NovaSeq X Plus
1
11 GB
Maya Kasowski, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4252CQLW
MultiplexedSample
bone marrow
,
umbilical cord blood
multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens umbilical cord blood cell; ... and 12 more samples
Donors
14 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0516IWTA
maya-kasowski:donor_control4
unspecified
Homo sapiens
IGVFDO1210OZHC
maya-kasowski:donor_control3
unspecified
Homo sapiens
IGVFDO1836DUYP
maya-kasowski:donor_4089
unspecified
Homo sapiens
IGVFDO2788XNBM
maya-kasowski:donor_4048
unspecified
Homo sapiens
IGVFDO3006RCEY
maya-kasowski:donor_4271
unspecified
Homo sapiens
IGVFDO3010QRAU
maya-kasowski:donor_4111
female
Homo sapiens
IGVFDO3765EKDF
maya-kasowski:donor_control2
unspecified
Homo sapiens
IGVFDO4373FEUT
maya-kasowski:donor_4120
unspecified
Homo sapiens
IGVFDO4458ECNK
maya-kasowski:donor_control1
unspecified
Homo sapiens
IGVFDO4733WBSW
maya-kasowski:donor_4083
unspecified
Homo sapiens