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INDEXED
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MeasurementSet
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IGVFDS0527PPHQ
IGVFDS0527PPHQ
released
Json view
File Set Type
experimental data
Summary
snMCT-seq
Assay Term
single-nucleus methylcytosine and transcriptome sequencing assay
Sample Summaries
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 12 days, Homo sapiens
Protocols
https://www.protocols.io/view/snmcat-v2-x54v9jby1g3e/v2
Aliases
chongyuan-luo:pgp_snmct_C37_day12
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1443AOYJ
fastq
reads
R1
1
Illumina NovaSeq X
4
5.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI2893HTQX
fastq
reads
R2
2
Illumina NovaSeq X
1
5.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI6504LMPX
fastq
reads
R2
2
Illumina NovaSeq X
4
5.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI6585ZSKN
fastq
reads
R1
1
Illumina NovaSeq X
1
5.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI6820ZAGS
fastq
reads
R1
1
Illumina NovaSeq X
3
5.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI6904XIEJ
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
2
5.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI7232VZCY
fastq
reads
R2
2
Illumina NovaSeq X
3
5.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI8715HJDR
fastq
reads
R1
1
Illumina NovaSeq X
2
5.8 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4268HKDG
InVitroSystem
fibroblast
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 12 days, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO0351NYZH
chongyuan-luo:C37
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA