IGVFDS0501ORTA

preview

This object is in preview status. Metadata is subject to change until this object is released.

File Set Type

experimental data

Summary

single-nucleus ATAC-seq (10x multiome)

Assay Term

single-nucleus ATAC-seq

Sample Summaries

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples

Protocols

https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn

Aliases

igvf:corces_measurementSet_X028_G4_ATAC

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Results (Illumina)

4 items

Read Names

IGVFFI1624ZHKC

fastq

reads

Illumina NovaSeq 6000

HV737DSX5

1.4 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI2977YFRI

fastq

reads

Barcode index

Illumina NovaSeq 6000

HV737DSX5

3.2 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI3097UCVF

fastq

reads

Illumina NovaSeq 6000

HV737DSX5

5.9 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI4008YBKK

fastq

reads

Illumina NovaSeq 6000

HV737DSX5

6.0 GB

Ryan Corces, Gladstone Institute UCSF

validated

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Associated Construct Library Sets

Summary

IGVFSM4873ZKQI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples