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IGVFDS0501ORTA

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_X028_G4_ATAC

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
I1
1
HV737DSX5
3
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
HV737DSX5
3
3.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
HV737DSX5
3
5.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
HV737DSX5
3
6.0 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN9938
female
Homo sapiens
  • igvf:corces_donor_BANN2103
male
Homo sapiens
  • igvf:corces_donor_BANN1083
male
Homo sapiens
  • igvf:corces_donor_BANN9702
male
Homo sapiens
  • igvf:corces_donor_BANN9926
female
Homo sapiens
  • igvf:corces_donor_BANN1814
male
Homo sapiens
  • igvf:corces_donor_BANN1329
male
Homo sapiens
  • igvf:corces_donor_BANN2005
male
Homo sapiens
  • igvf:corces_donor_BANN1614
male
Homo sapiens
  • igvf:corces_donor_BANN0351
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X028_G4_RNA
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF