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MeasurementSet
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IGVFDS0488NVQB
IGVFDS0488NVQB
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP015_G3_RNA
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1189ZTHQ
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
8
345 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1649HTHH
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
7
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2601ASUW
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
6
2.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3624GOGY
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
5
498 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3641KSCN
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
5
397 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4243FUGE
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
8
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6225LGXW
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
5
2.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6426OLLO
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
7
475 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6702QKOW
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
7
379 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7056SLXA
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
7
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM0903NROD
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0698ZMAQ
igvf:corces_donor_BANN1569
male
Homo sapiens
IGVFDO2928PSUK
igvf:corces_donor_BANN0950
male
Homo sapiens
IGVFDO3471KCPD
igvf:corces_donor_BANN1647
male
Homo sapiens
IGVFDO3500WGWY
igvf:corces_donor_BANN1083
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4170HAEN
igvf:corces_donor_BANN1864
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO5912PIZP
igvf:corces_donor_BANN1830
female
Homo sapiens
IGVFDO7109IWDJ
igvf:corces_donor_BANN2005
male
Homo sapiens
IGVFDO7606UOXI
igvf:corces_donor_BANN1570
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1451RVGA
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP015_G3_ATAC
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF