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IGVFDS0463BASV

released
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Description
Colitis_recovered DSS15-DSS-m1,DSS15-DSS-m2,DSS15-DSS-m4; Control DSS15-Control-m3,DSS15-Control-m5
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Mus musculus C57BL/6J colon cell
Protocols
Aliases
buenrostro-bernstein:surya-mouse-colon_mm-set8
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
R2
3
Read 2
11 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
3
Read 1
11 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
3
Barcode index
3.5 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell

Donors

5 items
Aliases
  • buenrostro-bernstein:surya-DSS15-Control-m5
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS15-DSS-m4
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS15-DSS-m2
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS15-Control-m3
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS15-DSS-m1
unspecified
Mus musculus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
  • buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set
Jason Buenrostro, Broad

Related Multiome Datasets

3 items
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set20
Jason Buenrostro, Broad
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set19
Jason Buenrostro, Broad
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set7
Jason Buenrostro, Broad