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IGVFDS0424WDCP

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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 62.0 years) peripheral blood mononuclear cell; ... and 17 more samples
Protocols
Aliases
jimmie-ye:XX11-SC1_snRNA

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R1
80
Read 1
5.7 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
81
1.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
82
Read 1
5.7 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
82
Read 2
8.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
80
1.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
81
Read 2
8.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
79
Read 2
8.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
81
Read 1
5.7 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
79
1.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
80
Read 2
8.0 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 62.0 years) peripheral blood mononuclear cell; ... and 17 more samples

Donors

19 items
Aliases
  • jimmie-ye:donor_196
female
Homo sapiens
  • jimmie-ye:donor_205
female
Homo sapiens
  • jimmie-ye:donor_343
female
Homo sapiens
  • jimmie-ye:donor_203
female
Homo sapiens
  • jimmie-ye:donor_168
female
Homo sapiens
  • jimmie-ye:donor_335
female
Homo sapiens
  • jimmie-ye:donor_198
female
Homo sapiens
  • jimmie-ye:donor_347
male
Homo sapiens
  • jimmie-ye:donor_167
male
Homo sapiens
  • jimmie-ye:donor_82
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • jimmie-ye:XX11-SC1_snATAC
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF