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IGVFDS0421WOPD

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 6 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP032_G4_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
R2
1
Read 2
19NHCA4LE
6
9.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19NHCA4LE
6
13 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19NHCA4LE
7
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19NHCA4LE
8
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
19NHCA4LE
7
9.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
19NHCA4LE
6
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19NHCA4LE
8
13 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
19NHCA4LE
8
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
19NHCA4LE
8
9.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19NHCA4LE
7
13 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 6 more samples

Donors

8 items
Aliases
  • igvf:corces_donor_BANN1750
male
Homo sapiens
  • igvf:corces_donor_BANN1569
male
Homo sapiens
  • igvf:corces_donor_BANN1827
male
Homo sapiens
  • igvf:corces_donor_BANN1256
female
Homo sapiens
  • igvf:corces_donor_BANN0950
male
Homo sapiens
  • igvf:corces_donor_BANN1830
female
Homo sapiens
  • igvf:corces_donor_BANN0874
female
Homo sapiens
  • igvf:corces_donor_BANN2149
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP032_G4_ATAC
Ryan Corces, Gladstone Institute UCSF