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INDEXED
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MeasurementSet
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IGVFDS0412WLCW
IGVFDS0412WLCW
released
Json view
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
Mus musculus CAST/EiJ (female, 10 weeks) left cerebral cortex tissue
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-atac-se-ewov1nm2kgr2/v1
Aliases
ansuman-satpathy:snATAC-seq_mouse_bridge_102
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1860TEYU
fastq
reads
R1
1
Read 1
IGVFFI7052NJFS
Illumina NovaSeq 6000
HV7LKDSX5
1
25 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2327RETF
fastq
reads
R2
1
Barcode index
IGVFFI7052NJFS
Illumina NovaSeq 6000
HV7LKDSX5
1
8.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8292SITB
fastq
reads
R3
1
Read 2
IGVFFI7052NJFS
Illumina NovaSeq 6000
HV7LKDSX5
1
26 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9476EXNQ
fastq
reads
I1
1
IGVFFI7052NJFS
Illumina NovaSeq 6000
HV7LKDSX5
1
3.4 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9059AKNM
Tissue
left cerebral cortex
Mus musculus CAST/EiJ (female, 10 weeks) left cerebral cortex tissue
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO5114NYSN
ansuman-satpathy:102_CASTJ_10F
female
Mus musculus
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7477NVAD
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
ansuman-satpathy:snRNA-seq_mouse_bridge_102
Ansuman Satpathy, Stanford