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INDEXED
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MeasurementSet
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IGVFDS0387PFFN
IGVFDS0387PFFN
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 179)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 442
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
36 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0095WZGR
fastq
reads
R1
9142
Read 1
IGVFFI8068VHHR
Illumina NovaSeq X
22LMVNLT4
750 MB
Jason Buenrostro, Broad
validated
IGVFFI0324KJBZ
fastq
reads
R1
8950
Read 1
IGVFFI7152PASO
Illumina NovaSeq X
22LMVNLT4
759 MB
Jason Buenrostro, Broad
validated
IGVFFI0343DRXP
fastq
reads
R2
8950
Read 2
IGVFFI7152PASO
Illumina NovaSeq X
22LMVNLT4
728 MB
Jason Buenrostro, Broad
validated
IGVFFI0945OUUB
fastq
reads
I1
8950
Barcode index
IGVFFI7152PASO
Illumina NovaSeq X
22LMVNLT4
444 MB
Jason Buenrostro, Broad
validated
IGVFFI0982KDZD
fastq
reads
R2
8662
Read 2
IGVFFI9742VKZM
Illumina NovaSeq X
22LMVNLT4
781 MB
Jason Buenrostro, Broad
validated
IGVFFI0998MVXA
fastq
reads
R1
1020
Read 1
IGVFFI6263VIJW
Illumina NovaSeq X
22773CLT3
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI1163OOHP
fastq
reads
I1
8854
Barcode index
IGVFFI1408DSBF
Illumina NovaSeq X
22LMVNLT4
464 MB
Jason Buenrostro, Broad
validated
IGVFFI1250FXRI
fastq
reads
R2
1020
Read 2
IGVFFI6263VIJW
Illumina NovaSeq X
22773CLT3
493 MB
Jason Buenrostro, Broad
validated
IGVFFI1628NWTK
fastq
reads
I1
978
Barcode index
IGVFFI8724UKZD
Illumina NovaSeq X
22773CLT3
437 MB
Jason Buenrostro, Broad
validated
IGVFFI1815PRSB
fastq
reads
R1
1062
Read 1
IGVFFI7467KMCI
Illumina NovaSeq X
22773CLT3
1.0 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6917PRUY
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 179)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0378ECZQ
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 433
Jason Buenrostro, Broad