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INDEXED
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MeasurementSet
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IGVFDS0378ECZQ
IGVFDS0378ECZQ
released
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 179)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scRNA Lib 433
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
6 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2852FQFX
fastq
reads
R1
894
Read 1
IGVFFI0220XANG
Illumina NovaSeq X
22773CLT3
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI5812FNZU
fastq
reads
I1
894
Barcode index
IGVFFI0220XANG
Illumina NovaSeq X
22773CLT3
452 MB
Jason Buenrostro, Broad
validated
IGVFFI8113TGZI
fastq
reads
I1
852
Barcode index
IGVFFI8349YOBD
Illumina NovaSeq X
22773CLT3
473 MB
Jason Buenrostro, Broad
validated
IGVFFI8143UHXX
fastq
reads
R2
852
Read 2
IGVFFI8349YOBD
Illumina NovaSeq X
22773CLT3
659 MB
Jason Buenrostro, Broad
validated
IGVFFI9117HNCK
fastq
reads
R1
852
Read 1
IGVFFI8349YOBD
Illumina NovaSeq X
22773CLT3
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI9124FCMZ
fastq
reads
R2
894
Read 2
IGVFFI0220XANG
Illumina NovaSeq X
22773CLT3
614 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6917PRUY
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 179)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0387PFFN
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:scATAC Lib 442
Jason Buenrostro, Broad