{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS0333TAKU/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0333TAKU",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep4-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM7887QAEK](/in-vitro-systems/IGVFSM7887QAEK/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7887QAEK/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS0333TAKU](/measurement-sets/IGVFDS0333TAKU/) has sequence file(s) [IGVFFI4575KAIW](/sequence-files/IGVFFI4575KAIW/), [IGVFFI3707PDQM](/sequence-files/IGVFFI3707PDQM/), [IGVFFI1462PDEY](/sequence-files/IGVFFI1462PDEY/), [IGVFFI8000AXTW](/sequence-files/IGVFFI8000AXTW/), [IGVFFI5701UGPX](/sequence-files/IGVFFI5701UGPX/), [IGVFFI5051HZOM](/sequence-files/IGVFFI5051HZOM/), [IGVFFI1431VMMF](/sequence-files/IGVFFI1431VMMF/), [IGVFFI1426BWAB](/sequence-files/IGVFFI1426BWAB/), [IGVFFI0174USAR](/sequence-files/IGVFFI0174USAR/), [IGVFFI6204GUIT](/sequence-files/IGVFFI6204GUIT/), [IGVFFI4569XYJP](/sequence-files/IGVFFI4569XYJP/), [IGVFFI5274TVBZ](/sequence-files/IGVFFI5274TVBZ/), [IGVFFI6991FPKD](/sequence-files/IGVFFI6991FPKD/), [IGVFFI1064UYZV](/sequence-files/IGVFFI1064UYZV/), [IGVFFI6196BAOW](/sequence-files/IGVFFI6196BAOW/), [IGVFFI2848WEPJ](/sequence-files/IGVFFI2848WEPJ/), [IGVFFI8297FNWK](/sequence-files/IGVFFI8297FNWK/), [IGVFFI6720ZEEX](/sequence-files/IGVFFI6720ZEEX/), [IGVFFI8793NYKD](/sequence-files/IGVFFI8793NYKD/), [IGVFFI9654RPED](/sequence-files/IGVFFI9654RPED/), [IGVFFI3476MBUB](/sequence-files/IGVFFI3476MBUB/), [IGVFFI8627SPVH](/sequence-files/IGVFFI8627SPVH/), [IGVFFI3261KWLF](/sequence-files/IGVFFI3261KWLF/), [IGVFFI1845WBIW](/sequence-files/IGVFFI1845WBIW/), [IGVFFI9831JAXI](/sequence-files/IGVFFI9831JAXI/), [IGVFFI9036LSPR](/sequence-files/IGVFFI9036LSPR/), [IGVFFI8707LFXT](/sequence-files/IGVFFI8707LFXT/), [IGVFFI5662SNOZ](/sequence-files/IGVFFI5662SNOZ/), [IGVFFI2646YWCX](/sequence-files/IGVFFI2646YWCX/), [IGVFFI8822TWFI](/sequence-files/IGVFFI8822TWFI/), [IGVFFI4918WGKK](/sequence-files/IGVFFI4918WGKK/), [IGVFFI4920SLPO](/sequence-files/IGVFFI4920SLPO/), [IGVFFI5731OQND](/sequence-files/IGVFFI5731OQND/), [IGVFFI2921IEOK](/sequence-files/IGVFFI2921IEOK/), [IGVFFI6766RHAF](/sequence-files/IGVFFI6766RHAF/), [IGVFFI4367KBDD](/sequence-files/IGVFFI4367KBDD/), [IGVFFI4920UPLF](/sequence-files/IGVFFI4920UPLF/), [IGVFFI0222FTDC](/sequence-files/IGVFFI0222FTDC/), [IGVFFI8249RMDX](/sequence-files/IGVFFI8249RMDX/), [IGVFFI7099BDRG](/sequence-files/IGVFFI7099BDRG/), [IGVFFI3774EFGR](/sequence-files/IGVFFI3774EFGR/), [IGVFFI6945HKHO](/sequence-files/IGVFFI6945HKHO/), [IGVFFI5007IUMS](/sequence-files/IGVFFI5007IUMS/), [IGVFFI4398XITN](/sequence-files/IGVFFI4398XITN/), [IGVFFI0352WGND](/sequence-files/IGVFFI0352WGND/), [IGVFFI1562GJLN](/sequence-files/IGVFFI1562GJLN/), [IGVFFI5316SRFE](/sequence-files/IGVFFI5316SRFE/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS0333TAKU/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0333TAKU](/measurement-sets/IGVFDS0333TAKU/) has sequence file(s): [IGVFFI4575KAIW](/sequence-files/IGVFFI4575KAIW/), [IGVFFI3707PDQM](/sequence-files/IGVFFI3707PDQM/), [IGVFFI1462PDEY](/sequence-files/IGVFFI1462PDEY/), [IGVFFI8000AXTW](/sequence-files/IGVFFI8000AXTW/), [IGVFFI5701UGPX](/sequence-files/IGVFFI5701UGPX/), [IGVFFI5051HZOM](/sequence-files/IGVFFI5051HZOM/), [IGVFFI1431VMMF](/sequence-files/IGVFFI1431VMMF/), [IGVFFI1426BWAB](/sequence-files/IGVFFI1426BWAB/), [IGVFFI0174USAR](/sequence-files/IGVFFI0174USAR/), [IGVFFI6204GUIT](/sequence-files/IGVFFI6204GUIT/), [IGVFFI4569XYJP](/sequence-files/IGVFFI4569XYJP/), [IGVFFI5274TVBZ](/sequence-files/IGVFFI5274TVBZ/), [IGVFFI6991FPKD](/sequence-files/IGVFFI6991FPKD/), [IGVFFI1064UYZV](/sequence-files/IGVFFI1064UYZV/), [IGVFFI6196BAOW](/sequence-files/IGVFFI6196BAOW/), [IGVFFI2848WEPJ](/sequence-files/IGVFFI2848WEPJ/), [IGVFFI8297FNWK](/sequence-files/IGVFFI8297FNWK/), [IGVFFI6720ZEEX](/sequence-files/IGVFFI6720ZEEX/), [IGVFFI8793NYKD](/sequence-files/IGVFFI8793NYKD/), [IGVFFI9654RPED](/sequence-files/IGVFFI9654RPED/), [IGVFFI3476MBUB](/sequence-files/IGVFFI3476MBUB/), [IGVFFI8627SPVH](/sequence-files/IGVFFI8627SPVH/), [IGVFFI3261KWLF](/sequence-files/IGVFFI3261KWLF/), [IGVFFI1845WBIW](/sequence-files/IGVFFI1845WBIW/), [IGVFFI9831JAXI](/sequence-files/IGVFFI9831JAXI/), [IGVFFI9036LSPR](/sequence-files/IGVFFI9036LSPR/), [IGVFFI8707LFXT](/sequence-files/IGVFFI8707LFXT/), [IGVFFI5662SNOZ](/sequence-files/IGVFFI5662SNOZ/), [IGVFFI2646YWCX](/sequence-files/IGVFFI2646YWCX/), [IGVFFI8822TWFI](/sequence-files/IGVFFI8822TWFI/), [IGVFFI4918WGKK](/sequence-files/IGVFFI4918WGKK/), [IGVFFI4920SLPO](/sequence-files/IGVFFI4920SLPO/), [IGVFFI5731OQND](/sequence-files/IGVFFI5731OQND/), [IGVFFI2921IEOK](/sequence-files/IGVFFI2921IEOK/), [IGVFFI6766RHAF](/sequence-files/IGVFFI6766RHAF/), [IGVFFI4367KBDD](/sequence-files/IGVFFI4367KBDD/), [IGVFFI4920UPLF](/sequence-files/IGVFFI4920UPLF/), [IGVFFI0222FTDC](/sequence-files/IGVFFI0222FTDC/), [IGVFFI8249RMDX](/sequence-files/IGVFFI8249RMDX/), [IGVFFI7099BDRG](/sequence-files/IGVFFI7099BDRG/), [IGVFFI3774EFGR](/sequence-files/IGVFFI3774EFGR/), [IGVFFI6945HKHO](/sequence-files/IGVFFI6945HKHO/), [IGVFFI5007IUMS](/sequence-files/IGVFFI5007IUMS/), [IGVFFI4398XITN](/sequence-files/IGVFFI4398XITN/), [IGVFFI0352WGND](/sequence-files/IGVFFI0352WGND/), [IGVFFI1562GJLN](/sequence-files/IGVFFI1562GJLN/), [IGVFFI5316SRFE](/sequence-files/IGVFFI5316SRFE/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0333TAKU/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS0333TAKU](/measurement-sets/IGVFDS0333TAKU/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS0333TAKU/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
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"aliases": [
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],
"status": "released"
}
],
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"creation_timestamp": "2023-12-13T08:48:14.810527+00:00",
"donors": [
{
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"accession": "IGVFDO1080XFGV",
"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
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