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IGVFDS0332EHYL

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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP004_G3_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
I1
1
223JJGLT3
7
226 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223JJGLT3
8
792 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223JJGLT3
8
217 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
223JJGLT3
6
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223JJGLT3
6
237 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223JJGLT3
5
243 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
223JJGLT3
7
238 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223JJGLT3
5
887 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
223JJGLT3
6
250 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223JJGLT3
7
827 MB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN0138
female
Homo sapiens
  • igvf:corces_donor_BANN1063
male
Homo sapiens
  • igvf:corces_donor_BANN1256
female
Homo sapiens
  • igvf:corces_donor_BANN1028
male
Homo sapiens
  • igvf:corces_donor_BANN1412
male
Homo sapiens
  • igvf:corces_donor_BANN0217
female
Homo sapiens
  • igvf:corces_donor_BANN0129
male
Homo sapiens
  • igvf:corces_donor_BANN0210
male
Homo sapiens
  • igvf:corces_donor_BANN1201
male
Homo sapiens
  • igvf:corces_donor_BANN0621
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP004_G3_ATAC
Ryan Corces, Gladstone Institute UCSF