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INDEXED
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MeasurementSet
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IGVFDS0252BRRM
IGVFDS0252BRRM
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 89 years) cerebellar cortex tissue; Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X014_G2_ATAC
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2425WHPW
fastq
reads
R2
1
Barcode index
Illumina NovaSeq 6000
HJ7TNDSX5
3
3.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2674PPIG
fastq
reads
R3
1
Read 2
Illumina NovaSeq 6000
HJ7TNDSX5
3
6.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2837ZRJX
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
HJ7TNDSX5
3
5.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7261YTDT
fastq
reads
I1
1
Illumina NovaSeq 6000
HJ7TNDSX5
3
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6111OIGC
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 89 years) cerebellar cortex tissue; Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO1627RQLG
igvf:corces_donor_BANN1170
male
Homo sapiens
IGVFDO3497MBPK
igvf:corces_donor_BANN0002
male
Homo sapiens
IGVFDO3795BUZW
igvf:corces_donor_BANN1311
male
Homo sapiens
IGVFDO4783EEYU
igvf:corces_donor_BANN1865
male
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO7095OCLJ
igvf:corces_donor_BANN9917
female
Homo sapiens
IGVFDO7754VJKM
igvf:corces_donor_BANN0341
male
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7626QFRS
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X014_G2_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF