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INDEXED
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MeasurementSet
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IGVFDS0238VKNF
IGVFDS0238VKNF
released
Json view
File Set Type
experimental data
Summary
CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Assay Term
in vitro CRISPR screen using single-cell RNA-seq
Sample Summaries
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)
Protocols
https://www.protocols.io/view/perturb-seq-characterizing-regulators-of-t-cell-fu-c5s9y6h6
https://www.protocols.io/view/crispra-tiling-screens-c5rfy53n
Aliases
charles-gersbach:cd8-tcells-perturb-seq-crispra-gex-rep3
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI4462ZXLC
fastq
reads
R1
3
IGVFFI6012DHNO
Illumina NovaSeq 6000
4
4.6 GB
Charles Gersbach, Duke
validated
IGVFFI6398QCVG
fastq
reads
R1
3
IGVFFI0994QEPT
Illumina NovaSeq 6000
3
4.6 GB
Charles Gersbach, Duke
validated
IGVFFI6606ARBS
fastq
reads
R2
3
IGVFFI0994QEPT
Illumina NovaSeq 6000
3
11 GB
Charles Gersbach, Duke
validated
IGVFFI6761ZNFE
fastq
reads
R1
3
IGVFFI8536YCHC
Illumina NovaSeq 6000
1
4.6 GB
Charles Gersbach, Duke
validated
IGVFFI6787BWWZ
fastq
reads
R2
3
IGVFFI8536YCHC
Illumina NovaSeq 6000
1
11 GB
Charles Gersbach, Duke
validated
IGVFFI7249VOBK
fastq
reads
R2
3
IGVFFI5760CKQR
Illumina NovaSeq 6000
2
11 GB
Charles Gersbach, Duke
validated
IGVFFI7868FNQC
fastq
reads
R1
3
IGVFFI5760CKQR
Illumina NovaSeq 6000
2
4.6 GB
Charles Gersbach, Duke
validated
IGVFFI8501DMZJ
fastq
reads
R2
3
IGVFFI6012DHNO
Illumina NovaSeq 6000
4
11 GB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2105CLXS
PrimaryCell
CD8-positive, alpha-beta memory T cell
IGVFDS0821YMMV
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4425KRAT
charles-gersbach:cd8-tcells-donor-8
unspecified
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS0821YMMV
guide (sgRNA) library targeting transcription start sites in 24 genes
IGVFFI1405WMSH
IGVFFI2489BLJI
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5239SBBT
AnalysisSet
activation Perturb-seq: differential gene expression quantifications, filtered feature barcode matrix
charles-gersbach:cd8-tcells-analysis-set-perturb-seq-crispra
Charles Gersbach, Duke
Auxiliary Datasets
1 item
Accession
Type
Summary
Files
Aliases
Lab
IGVFDS3945FAEL
AuxiliarySet
gRNA sequencing for CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
IGVFFI1328IASZ
,
IGVFFI7135VSEK
,
IGVFFI3786SYLP
,
IGVFFI3652DBNT
,
IGVFFI2032UXJP
,
IGVFFI8543ICNA
,
IGVFFI2506CIAV
,
IGVFFI2756XAJA
charles-gersbach:cd8-tcells-perturb-seq-crispra-grna-rep3
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke