IGVFDS0237AFZT

{
    "@context": "/terms/",
    "@id": "/measurement-sets/IGVFDS0237AFZT/",
    "@type": [
        "MeasurementSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS0237AFZT",
    "aliases": [
        "jesse-engreitz:measurement_set-scRNAseq_2kG_2PMDox1_5"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0003660/",
        "status": "released",
        "term_name": "in vitro CRISPR screen using single-cell RNA-seq"
    },
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "NTR term ID",
                "detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_ntr_term_id",
                "path": "/sample-terms/NTR_0000753/"
            },
            {
                "category": "missing sequence specification",
                "detail": "Auxiliary set [IGVFDS0616JFOF](/auxiliary-sets/IGVFDS0616JFOF/) has sequence file(s): [IGVFFI4920MOQE](/sequence-files/IGVFFI4920MOQE/), [IGVFFI0354EWAS](/sequence-files/IGVFFI0354EWAS/), [IGVFFI9851LYSX](/sequence-files/IGVFFI9851LYSX/), [IGVFFI1114ENMU](/sequence-files/IGVFFI1114ENMU/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_missing_seqspec",
                "path": "/auxiliary-sets/IGVFDS0616JFOF/"
            },
            {
                "category": "missing sequence specification",
                "detail": "Measurement set [IGVFDS0237AFZT](/measurement-sets/IGVFDS0237AFZT/) has sequence file(s): [IGVFFI2039VEQM](/sequence-files/IGVFFI2039VEQM/), [IGVFFI7082VRDG](/sequence-files/IGVFFI7082VRDG/), [IGVFFI2480DPKH](/sequence-files/IGVFFI2480DPKH/), [IGVFFI2021EESI](/sequence-files/IGVFFI2021EESI/), [IGVFFI3035UBCN](/sequence-files/IGVFFI3035UBCN/), [IGVFFI7931SHKY](/sequence-files/IGVFFI7931SHKY/), [IGVFFI1033CFTA](/sequence-files/IGVFFI1033CFTA/), [IGVFFI8892AJBB](/sequence-files/IGVFFI8892AJBB/), [IGVFFI9792FJOX](/sequence-files/IGVFFI9792FJOX/), [IGVFFI6235EEEC](/sequence-files/IGVFFI6235EEEC/), [IGVFFI9025VCUH](/sequence-files/IGVFFI9025VCUH/), [IGVFFI1038DYSK](/sequence-files/IGVFFI1038DYSK/), [IGVFFI1724MLSN](/sequence-files/IGVFFI1724MLSN/), [IGVFFI8097YIOD](/sequence-files/IGVFFI8097YIOD/), [IGVFFI2653QHJN](/sequence-files/IGVFFI2653QHJN/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_missing_seqspec",
                "path": "/measurement-sets/IGVFDS0237AFZT/"
            }
        ]
    },
    "auxiliary_sets": [
        {
            "@id": "/auxiliary-sets/IGVFDS0616JFOF/",
            "accession": "IGVFDS0616JFOF",
            "aliases": [
                "jesse-engreitz:auxiliary_sets-scRNAseq_2kG_2PMDox1_5"
            ],
            "file_set_type": "gRNA sequencing",
            "status": "preview"
        }
    ],
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
            "title": "Jesse Engreitz"
        },
        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
    },
    "control_for": [],
    "creation_timestamp": "2024-01-18T03:10:04.067988+00:00",
    "donors": [
        {
            "@id": "/human-donors/IGVFDO3459DFTW/",
            "accession": "IGVFDO3459DFTW",
            "aliases": [
                "igvf:donor_of_teloHAEC"
            ],
            "sex": "female",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "externally_hosted": false,
    "file_set_type": "experimental data",
    "files": [
        {
            "@id": "/sequence-files/IGVFFI2039VEQM/",
            "accession": "IGVFFI2039VEQM",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_b_TACAGACT_L001_R2_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:24:34.527017+00:00",
            "file_format": "fastq",
            "file_size": 5686996922,
            "href": "/sequence-files/IGVFFI2039VEQM/@@download/IGVFFI2039VEQM.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/82c51ec3-c1e6-489e-8648-b526f59cf514/IGVFFI2039VEQM.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_b_TACAGACT_L001_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7082VRDG/",
            "accession": "IGVFFI7082VRDG",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_c_ATTGCGTG_L001_I1_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:26:34.174834+00:00",
            "file_format": "fastq",
            "file_size": 1216281525,
            "href": "/sequence-files/IGVFFI7082VRDG/@@download/IGVFFI7082VRDG.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/4743d73c-add9-41e0-b006-e19b6fba4ee7/IGVFFI7082VRDG.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_c_ATTGCGTG_L001_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2480DPKH/",
            "accession": "IGVFFI2480DPKH",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_c_ATTGCGTG_L001_R2_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:25:38.731096+00:00",
            "file_format": "fastq",
            "file_size": 6126333243,
            "href": "/sequence-files/IGVFFI2480DPKH/@@download/IGVFFI2480DPKH.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/2b5f3b57-e3ab-4213-9616-385711513b08/IGVFFI2480DPKH.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_c_ATTGCGTG_L001_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2021EESI/",
            "accession": "IGVFFI2021EESI",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_d_GCGTACAC_L001_I1_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:27:28.280044+00:00",
            "file_format": "fastq",
            "file_size": 1207225942,
            "href": "/sequence-files/IGVFFI2021EESI/@@download/IGVFFI2021EESI.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/e2118c3d-3b90-4a2c-9030-145a34b6d553/IGVFFI2021EESI.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_d_GCGTACAC_L001_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3035UBCN/",
            "accession": "IGVFFI3035UBCN",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_d_GCGTACAC_L001_R1_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:27:42.241561+00:00",
            "file_format": "fastq",
            "file_size": 4605522426,
            "href": "/sequence-files/IGVFFI3035UBCN/@@download/IGVFFI3035UBCN.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/ec9ed8a1-4c29-4e62-b496-ff5d253dbad3/IGVFFI3035UBCN.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_d_GCGTACAC_L001_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7931SHKY/",
            "accession": "IGVFFI7931SHKY",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_d_GCGTACAC_L001_R2_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:28:24.622274+00:00",
            "file_format": "fastq",
            "file_size": 6376792335,
            "href": "/sequence-files/IGVFFI7931SHKY/@@download/IGVFFI7931SHKY.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/28bc2856-aeab-4749-a6f0-66a57c429d11/IGVFFI7931SHKY.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_d_GCGTACAC_L001_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1033CFTA/",
            "accession": "IGVFFI1033CFTA",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq1-scRNAseq_2kG_2PMDox1_5_S1_L001_I1_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:31:07.371995+00:00",
            "file_format": "fastq",
            "file_size": 2440872769,
            "href": "/sequence-files/IGVFFI1033CFTA/@@download/IGVFFI1033CFTA.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/f21136c7-ceda-4773-8eb3-8022dbad0df6/IGVFFI1033CFTA.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210528_Broad_fastq/scRNAseq_2kG_2PMDox1_5_S1_L001_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8892AJBB/",
            "accession": "IGVFFI8892AJBB",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq1-scRNAseq_2kG_2PMDox1_5_S1_L001_R1_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:31:34.549921+00:00",
            "file_format": "fastq",
            "file_size": 8566941421,
            "href": "/sequence-files/IGVFFI8892AJBB/@@download/IGVFFI8892AJBB.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/4e328e65-9628-4ac2-b9d6-fb52f3b06f75/IGVFFI8892AJBB.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210528_Broad_fastq/scRNAseq_2kG_2PMDox1_5_S1_L001_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9792FJOX/",
            "accession": "IGVFFI9792FJOX",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_a_CGACTTGA_L001_R2_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:23:00.776471+00:00",
            "file_format": "fastq",
            "file_size": 5514798150,
            "href": "/sequence-files/IGVFFI9792FJOX/@@download/IGVFFI9792FJOX.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/da81a021-7988-47fa-bc9a-d29134d4d261/IGVFFI9792FJOX.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_a_CGACTTGA_L001_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6235EEEC/",
            "accession": "IGVFFI6235EEEC",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_b_TACAGACT_L001_R1_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:23:50.752911+00:00",
            "file_format": "fastq",
            "file_size": 4092354854,
            "href": "/sequence-files/IGVFFI6235EEEC/@@download/IGVFFI6235EEEC.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/68d778bf-40b1-48af-b9e6-71b3eee2b1ce/IGVFFI6235EEEC.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_b_TACAGACT_L001_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9025VCUH/",
            "accession": "IGVFFI9025VCUH",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_c_ATTGCGTG_L001_R1_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:26:47.887838+00:00",
            "file_format": "fastq",
            "file_size": 4398051504,
            "href": "/sequence-files/IGVFFI9025VCUH/@@download/IGVFFI9025VCUH.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/ade3b0fa-ad67-48f9-b471-7a00af107bfd/IGVFFI9025VCUH.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_c_ATTGCGTG_L001_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1038DYSK/",
            "accession": "IGVFFI1038DYSK",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq1-scRNAseq_2kG_2PMDox1_5_S1_L001_R2_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:29:21.960231+00:00",
            "file_format": "fastq",
            "file_size": 11567865635,
            "href": "/sequence-files/IGVFFI1038DYSK/@@download/IGVFFI1038DYSK.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/e8bb6094-6114-4d4e-82f6-0894617a7cfb/IGVFFI1038DYSK.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210528_Broad_fastq/scRNAseq_2kG_2PMDox1_5_S1_L001_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1724MLSN/",
            "accession": "IGVFFI1724MLSN",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_a_CGACTTGA_L001_I1_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:22:45.000832+00:00",
            "file_format": "fastq",
            "file_size": 1094451472,
            "href": "/sequence-files/IGVFFI1724MLSN/@@download/IGVFFI1724MLSN.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/7b37d20d-16e6-4b55-b9e8-565b7ac37556/IGVFFI1724MLSN.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_a_CGACTTGA_L001_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8097YIOD/",
            "accession": "IGVFFI8097YIOD",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_a_CGACTTGA_L001_R1_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:22:03.773215+00:00",
            "file_format": "fastq",
            "file_size": 3982033772,
            "href": "/sequence-files/IGVFFI8097YIOD/@@download/IGVFFI8097YIOD.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/52a0f8d2-d22f-4c36-8861-2f160b4e9a6a/IGVFFI8097YIOD.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_a_CGACTTGA_L001_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2653QHJN/",
            "accession": "IGVFFI2653QHJN",
            "aliases": [
                "jesse-engreitz:sequence_file-teloHAEC_2kG_library-NovaSeq2-scRNAseq_2kG_2PMDox1_5_b_TACAGACT_L001_I1_001.fastq.gz"
            ],
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-12-20T23:25:26.042049+00:00",
            "file_format": "fastq",
            "file_size": 1135859109,
            "href": "/sequence-files/IGVFFI2653QHJN/@@download/IGVFFI2653QHJN.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/12/20/77bbdcd8-c944-431e-98c4-426e9c7870ef/IGVFFI2653QHJN.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0008637/",
                "status": "released",
                "term_name": "Illumina NovaSeq 6000"
            },
            "status": "preview",
            "submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_5_b_TACAGACT_L001_I1_001.fastq.gz",
            "upload_status": "validated"
        }
    ],
    "input_for": [
        "/analysis-sets/IGVFDS7943IIWZ/"
    ],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "notes": "The readout 86015c12-b9a6-43ba-9601-5d75aab4d39c was removed from this measurement set.",
    "preferred_assay_title": "Perturb-seq",
    "protocols": [
        "https://www.protocols.io/view/systematic-perturb-seq-to-discover-endothelial-cel-261ged73yv47/v1"
    ],
    "samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM1061NWCP/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM1061NWCP",
            "aliases": [
                "jesse-engreitz:in_vitro_systems-scRNAseq_2kG_2PMDox1_5"
            ],
            "classifications": [
                "cell line"
            ],
            "construct_library_sets": [
                {
                    "@id": "/construct-library-sets/IGVFDS1298TUYG/",
                    "accession": "IGVFDS1298TUYG",
                    "file_set_type": "guide library",
                    "status": "preview",
                    "summary": "guide (sgRNA) library targeting genes in many genomic loci"
                }
            ],
            "modifications": [
                {
                    "@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
                    "modality": "interference",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/NTR_0000753/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:TeloHAEC"
                    ],
                    "status": "released",
                    "summary": "TeloHAEC",
                    "term_name": "TeloHAEC"
                }
            ],
            "status": "preview",
            "summary": "TeloHAEC cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
            "taxa": "Homo sapiens"
        }
    ],
    "schema_version": "23",
    "status": "preview",
    "submitted_by": {
        "@id": "/users/05fa0dc9-0e33-427c-9d1f-82393edc4a03/",
        "title": "Helen Kang"
    },
    "submitted_files_timestamp": "2023-12-20T23:22:03.773215+00:00",
    "summary": "CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci",
    "uuid": "1eeb26d9-a34f-44b6-a93e-f59265f6e830"
}