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INDEXED
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MeasurementSet
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IGVFDS0174SXAX
IGVFDS0174SXAX
released
Json view
File Set Type
experimental data
Summary
snMCT-seq
Assay Term
single-nucleus methylcytosine and transcriptome sequencing assay
Sample Summaries
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days, Homo sapiens
Protocols
https://www.protocols.io/view/snmcat-v2-x54v9jby1g3e/v2
Aliases
chongyuan-luo:pgp_snmct_C29_day3
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1247HNWB
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
1
6.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI3578QUNS
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
1
6.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI4343TQWN
fastq
reads
R2
2
Illumina NovaSeq X
3
6.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI4477HIGW
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
3
6.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI5919FKQB
fastq
reads
R2
2
Illumina NovaSeq X
2
6.4 GB
Chongyuan Luo, UCLA
validated
IGVFFI6258COAO
fastq
reads
R2
2
Illumina NovaSeq X
4
6.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI6675PGHL
fastq
reads
R1
1
Illumina NovaSeq X
2
6.4 GB
Chongyuan Luo, UCLA
validated
IGVFFI7863YTTX
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
4
6.6 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM3427AESQ
InVitroSystem
fibroblast
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO3754NCBP
chongyuan-luo:C29
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA