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IGVFDS0073HSBP

released
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Mus musculus CAST/EiJ (male) left cerebral cortex tissue (cellular sub pool: SS-PKR 603)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 1777

Sequencing Results (Illumina)

6 items
Read Names
fastq
reads
R1
8392
Read 1
22V3MJLT3
4.9 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8372
Read 1
22V3MJLT3
4.8 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8382
Read 2, Barcode index
22V3MJLT3
6.9 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8372
Read 2, Barcode index
22V3MJLT3
6.9 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8382
Read 1
22V3MJLT3
4.8 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8392
Read 2, Barcode index
22V3MJLT3
7.0 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
Tissue
Mus musculus CAST/EiJ (male) left cerebral cortex tissue (cellular sub pool: SS-PKR 603)

Donors

1 item
Accession
Aliases
Sex
Taxa
  • ali-mortazavi:773_CASTJ_10M
  • buenrostro-bernstein:Donor 2071
male
Mus musculus

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:scRNA Lib 841
Jason Buenrostro, Broad

Attribution

Award
HG011986
Principal Investigator(s)
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad