{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS0065BALX/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0065BALX",
"aliases": [
"jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep2-FFRep3-BinC_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM7206IJBO](/in-vitro-systems/IGVFSM7206IJBO/) has in progress subobject treatment [cf87f410-54ee-48ef-b654-8443c4fee032](/treatments/cf87f410-54ee-48ef-b654-8443c4fee032/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7206IJBO/"
},
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM7206IJBO](/in-vitro-systems/IGVFSM7206IJBO/) has in progress subobject treatment [4b5f0d13-ec20-4b91-85f5-a009cd91451f](/treatments/4b5f0d13-ec20-4b91-85f5-a009cd91451f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7206IJBO/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS0065BALX](/measurement-sets/IGVFDS0065BALX/) has sequence file(s) [IGVFFI8586VPPR](/sequence-files/IGVFFI8586VPPR/), [IGVFFI8843UYHF](/sequence-files/IGVFFI8843UYHF/), [IGVFFI5313ZEMH](/sequence-files/IGVFFI5313ZEMH/), [IGVFFI1281YORB](/sequence-files/IGVFFI1281YORB/), [IGVFFI5886CMBQ](/sequence-files/IGVFFI5886CMBQ/), [IGVFFI2685ENYY](/sequence-files/IGVFFI2685ENYY/), [IGVFFI1301DJCO](/sequence-files/IGVFFI1301DJCO/), [IGVFFI1204WBXU](/sequence-files/IGVFFI1204WBXU/), [IGVFFI9610IRZL](/sequence-files/IGVFFI9610IRZL/), [IGVFFI9106FESE](/sequence-files/IGVFFI9106FESE/), [IGVFFI5915OVJI](/sequence-files/IGVFFI5915OVJI/), [IGVFFI4862PXOA](/sequence-files/IGVFFI4862PXOA/), [IGVFFI5145GBLA](/sequence-files/IGVFFI5145GBLA/), [IGVFFI9041TRSL](/sequence-files/IGVFFI9041TRSL/), [IGVFFI3258ZKHX](/sequence-files/IGVFFI3258ZKHX/), [IGVFFI8462SZFS](/sequence-files/IGVFFI8462SZFS/), [IGVFFI6242QUBR](/sequence-files/IGVFFI6242QUBR/), [IGVFFI9808BYZQ](/sequence-files/IGVFFI9808BYZQ/), [IGVFFI0151HKAX](/sequence-files/IGVFFI0151HKAX/), [IGVFFI4840GQHK](/sequence-files/IGVFFI4840GQHK/), [IGVFFI2722DYPL](/sequence-files/IGVFFI2722DYPL/), [IGVFFI0249ZMGG](/sequence-files/IGVFFI0249ZMGG/), [IGVFFI6348POWL](/sequence-files/IGVFFI6348POWL/), [IGVFFI3789ZIXR](/sequence-files/IGVFFI3789ZIXR/), [IGVFFI4496TFOS](/sequence-files/IGVFFI4496TFOS/), [IGVFFI2763LQHR](/sequence-files/IGVFFI2763LQHR/), [IGVFFI2703JATP](/sequence-files/IGVFFI2703JATP/), [IGVFFI3006WTYS](/sequence-files/IGVFFI3006WTYS/), [IGVFFI4044ZTXH](/sequence-files/IGVFFI4044ZTXH/), [IGVFFI9079GJFL](/sequence-files/IGVFFI9079GJFL/), [IGVFFI9382RWTJ](/sequence-files/IGVFFI9382RWTJ/), [IGVFFI4123TMRD](/sequence-files/IGVFFI4123TMRD/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS0065BALX/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0065BALX](/measurement-sets/IGVFDS0065BALX/) has sequence file(s): [IGVFFI8586VPPR](/sequence-files/IGVFFI8586VPPR/), [IGVFFI8843UYHF](/sequence-files/IGVFFI8843UYHF/), [IGVFFI5313ZEMH](/sequence-files/IGVFFI5313ZEMH/), [IGVFFI1281YORB](/sequence-files/IGVFFI1281YORB/), [IGVFFI5886CMBQ](/sequence-files/IGVFFI5886CMBQ/), [IGVFFI2685ENYY](/sequence-files/IGVFFI2685ENYY/), [IGVFFI1301DJCO](/sequence-files/IGVFFI1301DJCO/), [IGVFFI1204WBXU](/sequence-files/IGVFFI1204WBXU/), [IGVFFI9610IRZL](/sequence-files/IGVFFI9610IRZL/), [IGVFFI9106FESE](/sequence-files/IGVFFI9106FESE/), [IGVFFI5915OVJI](/sequence-files/IGVFFI5915OVJI/), [IGVFFI4862PXOA](/sequence-files/IGVFFI4862PXOA/), [IGVFFI5145GBLA](/sequence-files/IGVFFI5145GBLA/), [IGVFFI9041TRSL](/sequence-files/IGVFFI9041TRSL/), [IGVFFI3258ZKHX](/sequence-files/IGVFFI3258ZKHX/), [IGVFFI8462SZFS](/sequence-files/IGVFFI8462SZFS/), [IGVFFI6242QUBR](/sequence-files/IGVFFI6242QUBR/), [IGVFFI9808BYZQ](/sequence-files/IGVFFI9808BYZQ/), [IGVFFI0151HKAX](/sequence-files/IGVFFI0151HKAX/), [IGVFFI4840GQHK](/sequence-files/IGVFFI4840GQHK/), [IGVFFI2722DYPL](/sequence-files/IGVFFI2722DYPL/), [IGVFFI0249ZMGG](/sequence-files/IGVFFI0249ZMGG/), [IGVFFI6348POWL](/sequence-files/IGVFFI6348POWL/), [IGVFFI3789ZIXR](/sequence-files/IGVFFI3789ZIXR/), [IGVFFI4496TFOS](/sequence-files/IGVFFI4496TFOS/), [IGVFFI2763LQHR](/sequence-files/IGVFFI2763LQHR/), [IGVFFI2703JATP](/sequence-files/IGVFFI2703JATP/), [IGVFFI3006WTYS](/sequence-files/IGVFFI3006WTYS/), [IGVFFI4044ZTXH](/sequence-files/IGVFFI4044ZTXH/), [IGVFFI9079GJFL](/sequence-files/IGVFFI9079GJFL/), [IGVFFI9382RWTJ](/sequence-files/IGVFFI9382RWTJ/), [IGVFFI4123TMRD](/sequence-files/IGVFFI4123TMRD/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0065BALX/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS0065BALX](/measurement-sets/IGVFDS0065BALX/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS0065BALX/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
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"aliases": [
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],
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}
],
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"donors": [
{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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},
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},
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"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-22T06:52:02.663100+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000134460/",
"geneid": "ENSG00000134460",
"name": "interleukin 2 receptor subunit alpha",
"status": "released",
"symbol": "IL2RA",
"synonyms": [
"interleukin-2 receptor subunit alpha",
"IL2R",
"TAC antigen",
"IMD41",
"IL-2R subunit alpha",
"CD25",
"IL-2 receptor subunit alpha",
"IDDM10",
"TCGFR",
"p55",
"interleukin 2 receptor, alpha"
]
}
],
"uuid": "5b680c76-da08-4c71-bde3-30be69d3a738"
}