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IGVFDS0046XBVO

released
GRU
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 206)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 594
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

33 items
Read Names
fastq
reads
R1
4094
Read 1
22523KLT3
1.2 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
9184
Read 1
22LMVNLT4
699 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
4022
Barcode index
22523KLT3
508 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8704
Barcode index
22LMVNLT4
437 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
4094
Read 2
22523KLT3
590 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
4022
Read 2
22523KLT3
583 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8800
Read 1
22LMVNLT4
739 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8512
Barcode index
22LMVNLT4
449 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8608
Read 2
22LMVNLT4
711 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8992
Read 2
22LMVNLT4
676 MB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 206)

Donors

99 items
Aliases
  • buenrostro-bernstein:Donor 1943
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1909
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1937
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1907
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1963
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1952
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1946
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1982
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1975
unspecified
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:scRNA Lib 385
Jason Buenrostro, Broad