{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS0022UYQK/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0022UYQK",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep3-BinB_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS0022UYQK](/measurement-sets/IGVFDS0022UYQK/) has sequence file(s) [IGVFFI1089XLDA](/sequence-files/IGVFFI1089XLDA/), [IGVFFI0691IQPZ](/sequence-files/IGVFFI0691IQPZ/), [IGVFFI9755SPNW](/sequence-files/IGVFFI9755SPNW/), [IGVFFI6614UOWJ](/sequence-files/IGVFFI6614UOWJ/), [IGVFFI4048MNSW](/sequence-files/IGVFFI4048MNSW/), [IGVFFI1420YJRZ](/sequence-files/IGVFFI1420YJRZ/), [IGVFFI7697UDFW](/sequence-files/IGVFFI7697UDFW/), [IGVFFI5432MJFD](/sequence-files/IGVFFI5432MJFD/), [IGVFFI2627NGVH](/sequence-files/IGVFFI2627NGVH/), [IGVFFI5304XHYN](/sequence-files/IGVFFI5304XHYN/), [IGVFFI7823CFZV](/sequence-files/IGVFFI7823CFZV/), [IGVFFI9091AGBC](/sequence-files/IGVFFI9091AGBC/), [IGVFFI8133DDNI](/sequence-files/IGVFFI8133DDNI/), [IGVFFI0053VRWL](/sequence-files/IGVFFI0053VRWL/), [IGVFFI1017UTUR](/sequence-files/IGVFFI1017UTUR/), [IGVFFI1611WXTW](/sequence-files/IGVFFI1611WXTW/), [IGVFFI5967UVLA](/sequence-files/IGVFFI5967UVLA/), [IGVFFI1649WGHW](/sequence-files/IGVFFI1649WGHW/), [IGVFFI4219FXDQ](/sequence-files/IGVFFI4219FXDQ/), [IGVFFI7107ANPB](/sequence-files/IGVFFI7107ANPB/), [IGVFFI6200KIOA](/sequence-files/IGVFFI6200KIOA/), [IGVFFI5120XPHJ](/sequence-files/IGVFFI5120XPHJ/), [IGVFFI4619WOCL](/sequence-files/IGVFFI4619WOCL/), [IGVFFI4252MKOG](/sequence-files/IGVFFI4252MKOG/), [IGVFFI1026SBLA](/sequence-files/IGVFFI1026SBLA/), [IGVFFI9037SEFD](/sequence-files/IGVFFI9037SEFD/), [IGVFFI9983YJQH](/sequence-files/IGVFFI9983YJQH/), [IGVFFI2222FCSX](/sequence-files/IGVFFI2222FCSX/), [IGVFFI1632XCGX](/sequence-files/IGVFFI1632XCGX/), [IGVFFI0905HGFV](/sequence-files/IGVFFI0905HGFV/), [IGVFFI1356PVVE](/sequence-files/IGVFFI1356PVVE/), [IGVFFI1450AZDX](/sequence-files/IGVFFI1450AZDX/), [IGVFFI0549QXSE](/sequence-files/IGVFFI0549QXSE/), [IGVFFI2288HNPG](/sequence-files/IGVFFI2288HNPG/), [IGVFFI7102ATDM](/sequence-files/IGVFFI7102ATDM/), [IGVFFI2693EXGY](/sequence-files/IGVFFI2693EXGY/), [IGVFFI9603YDUB](/sequence-files/IGVFFI9603YDUB/), [IGVFFI6523ULUC](/sequence-files/IGVFFI6523ULUC/), [IGVFFI8004NHDR](/sequence-files/IGVFFI8004NHDR/), [IGVFFI6892WDZV](/sequence-files/IGVFFI6892WDZV/), [IGVFFI2082SYOE](/sequence-files/IGVFFI2082SYOE/), [IGVFFI1074HOXI](/sequence-files/IGVFFI1074HOXI/), [IGVFFI5752SSZF](/sequence-files/IGVFFI5752SSZF/), [IGVFFI5436ZQLU](/sequence-files/IGVFFI5436ZQLU/), [IGVFFI0664MQGJ](/sequence-files/IGVFFI0664MQGJ/), [IGVFFI9288MPPA](/sequence-files/IGVFFI9288MPPA/), [IGVFFI5980OVLF](/sequence-files/IGVFFI5980OVLF/), [IGVFFI0915TPPR](/sequence-files/IGVFFI0915TPPR/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS0022UYQK/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0022UYQK](/measurement-sets/IGVFDS0022UYQK/) has sequence file(s): [IGVFFI1089XLDA](/sequence-files/IGVFFI1089XLDA/), [IGVFFI0691IQPZ](/sequence-files/IGVFFI0691IQPZ/), [IGVFFI9755SPNW](/sequence-files/IGVFFI9755SPNW/), [IGVFFI6614UOWJ](/sequence-files/IGVFFI6614UOWJ/), [IGVFFI4048MNSW](/sequence-files/IGVFFI4048MNSW/), [IGVFFI1420YJRZ](/sequence-files/IGVFFI1420YJRZ/), [IGVFFI7697UDFW](/sequence-files/IGVFFI7697UDFW/), [IGVFFI5432MJFD](/sequence-files/IGVFFI5432MJFD/), [IGVFFI2627NGVH](/sequence-files/IGVFFI2627NGVH/), [IGVFFI5304XHYN](/sequence-files/IGVFFI5304XHYN/), [IGVFFI7823CFZV](/sequence-files/IGVFFI7823CFZV/), [IGVFFI9091AGBC](/sequence-files/IGVFFI9091AGBC/), [IGVFFI8133DDNI](/sequence-files/IGVFFI8133DDNI/), [IGVFFI0053VRWL](/sequence-files/IGVFFI0053VRWL/), [IGVFFI1017UTUR](/sequence-files/IGVFFI1017UTUR/), [IGVFFI1611WXTW](/sequence-files/IGVFFI1611WXTW/), [IGVFFI5967UVLA](/sequence-files/IGVFFI5967UVLA/), [IGVFFI1649WGHW](/sequence-files/IGVFFI1649WGHW/), [IGVFFI4219FXDQ](/sequence-files/IGVFFI4219FXDQ/), [IGVFFI7107ANPB](/sequence-files/IGVFFI7107ANPB/), [IGVFFI6200KIOA](/sequence-files/IGVFFI6200KIOA/), [IGVFFI5120XPHJ](/sequence-files/IGVFFI5120XPHJ/), [IGVFFI4619WOCL](/sequence-files/IGVFFI4619WOCL/), [IGVFFI4252MKOG](/sequence-files/IGVFFI4252MKOG/), [IGVFFI1026SBLA](/sequence-files/IGVFFI1026SBLA/), [IGVFFI9037SEFD](/sequence-files/IGVFFI9037SEFD/), [IGVFFI9983YJQH](/sequence-files/IGVFFI9983YJQH/), [IGVFFI2222FCSX](/sequence-files/IGVFFI2222FCSX/), [IGVFFI1632XCGX](/sequence-files/IGVFFI1632XCGX/), [IGVFFI0905HGFV](/sequence-files/IGVFFI0905HGFV/), [IGVFFI1356PVVE](/sequence-files/IGVFFI1356PVVE/), [IGVFFI1450AZDX](/sequence-files/IGVFFI1450AZDX/), [IGVFFI0549QXSE](/sequence-files/IGVFFI0549QXSE/), [IGVFFI2288HNPG](/sequence-files/IGVFFI2288HNPG/), [IGVFFI7102ATDM](/sequence-files/IGVFFI7102ATDM/), [IGVFFI2693EXGY](/sequence-files/IGVFFI2693EXGY/), [IGVFFI9603YDUB](/sequence-files/IGVFFI9603YDUB/), [IGVFFI6523ULUC](/sequence-files/IGVFFI6523ULUC/), [IGVFFI8004NHDR](/sequence-files/IGVFFI8004NHDR/), [IGVFFI6892WDZV](/sequence-files/IGVFFI6892WDZV/), [IGVFFI2082SYOE](/sequence-files/IGVFFI2082SYOE/), [IGVFFI1074HOXI](/sequence-files/IGVFFI1074HOXI/), [IGVFFI5752SSZF](/sequence-files/IGVFFI5752SSZF/), [IGVFFI5436ZQLU](/sequence-files/IGVFFI5436ZQLU/), [IGVFFI0664MQGJ](/sequence-files/IGVFFI0664MQGJ/), [IGVFFI9288MPPA](/sequence-files/IGVFFI9288MPPA/), [IGVFFI5980OVLF](/sequence-files/IGVFFI5980OVLF/), [IGVFFI0915TPPR](/sequence-files/IGVFFI0915TPPR/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0022UYQK/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM9112SDPK](/in-vitro-systems/IGVFSM9112SDPK/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9112SDPK/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS0022UYQK](/measurement-sets/IGVFDS0022UYQK/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS0022UYQK/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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],
"status": "released"
}
],
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"creation_timestamp": "2023-12-13T08:48:13.523199+00:00",
"donors": [
{
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"accession": "IGVFDO1080XFGV",
"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
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},
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"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "0fc35b87-87fb-4ba3-b0ea-1ff17b222048"
}