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INDEXED
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MeasurementSet
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IGVFDS0017MVPN
IGVFDS0017MVPN
released
Json view
File Set Type
experimental data
Summary
snMCT-seq
Assay Term
single-nucleus methylcytosine and transcriptome sequencing assay
Sample Summaries
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days
Protocols
https://www.protocols.io/view/snmcat-v2-x54v9jby1g3e/v2
Aliases
chongyuan-luo:pgp_snmct_C38_day3
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0599SVBQ
fastq
reads
R2
2
Illumina NovaSeq X
4
5.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI1148TRKT
fastq
reads
R2
2
Illumina NovaSeq X
3
5.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI3380DJRD
fastq
reads
R2
2
Illumina NovaSeq X
2
5.2 GB
Chongyuan Luo, UCLA
validated
IGVFFI7865LMEM
fastq
reads
R1
1
Illumina NovaSeq X
3
5.4 GB
Chongyuan Luo, UCLA
validated
IGVFFI7934RMFL
fastq
reads
R1
1
Illumina NovaSeq X
2
5.2 GB
Chongyuan Luo, UCLA
validated
IGVFFI7944OUXT
fastq
reads
R2
2
Illumina NovaSeq X
1
5.2 GB
Chongyuan Luo, UCLA
validated
IGVFFI9022UUZJ
fastq
reads
R1
1
Illumina NovaSeq X
1
5.3 GB
Chongyuan Luo, UCLA
validated
IGVFFI9693WKPS
fastq
reads
R1
1
Illumina NovaSeq X
4
5.3 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM1041YTQX
InVitroSystem
fibroblast
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO2328XGNY
chongyuan-luo:C38
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA