IGVFDS0008XKIZ

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS0008XKIZ/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS0008XKIZ",
10    "aliases": [
11        "ansuman-satpathy:snATAC-seq_igvf16_10x5"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0002762/",
15        "assay_slims": [
16            "chromatin accessibility"
17        ],
18        "status": "released",
19        "term_name": "single-nucleus ATAC-seq"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "mismatched status",
25                "detail": "Released auxiliary set [IGVFDS7766RXOL](/auxiliary-sets/IGVFDS7766RXOL/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_item_status",
29                "path": "/auxiliary-sets/IGVFDS7766RXOL/"
30            },
31            {
32                "category": "mismatched status",
33                "detail": "Released multiplexed sample [IGVFSM1943HMCZ](/multiplexed-samples/IGVFSM1943HMCZ/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_item_status",
37                "path": "/multiplexed-samples/IGVFSM1943HMCZ/"
38            }
39        ]
40    },
41    "auxiliary_sets": [
42        {
43            "@id": "/auxiliary-sets/IGVFDS7766RXOL/",
44            "accession": "IGVFDS7766RXOL",
45            "aliases": [
46                "ansuman-satpathy:multiseq_igvf16_10x5"
47            ],
48            "file_set_type": "lipid-conjugated oligo sequencing",
49            "status": "released"
50        }
51    ],
52    "award": {
53        "@id": "/awards/HG012076/",
54        "component": "mapping",
55        "contact_pi": {
56            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
57            "title": "Ansuman Satpathy"
58        },
59        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
60    },
61    "control_for": [],
62    "controlled_access": true,
63    "creation_timestamp": "2025-02-03T21:18:30.713054+00:00",
64    "data_use_limitation_summaries": [
65        "GRU"
66    ],
67    "donors": [
68        {
69            "@id": "/human-donors/IGVFDO2379DTAU/",
70            "accession": "IGVFDO2379DTAU",
71            "aliases": [
72                "ansuman-satpathy:donor_of_A007",
73                "igvf:donor_A007"
74            ],
75            "sex": "female",
76            "status": "released",
77            "taxa": "Homo sapiens"
78        },
79        {
80            "@id": "/human-donors/IGVFDO1364EAZP/",
81            "accession": "IGVFDO1364EAZP",
82            "aliases": [
83                "ansuman-satpathy:donor_of_PENN086i-278-1",
84                "igvf:donor_PENN086i-278-1"
85            ],
86            "sex": "male",
87            "status": "released",
88            "taxa": "Homo sapiens"
89        },
90        {
91            "@id": "/human-donors/IGVFDO4532PFAJ/",
92            "accession": "IGVFDO4532PFAJ",
93            "aliases": [
94                "ansuman-satpathy:donor_of_A010",
95                "igvf:donor_A010"
96            ],
97            "sex": "female",
98            "status": "released",
99            "taxa": "Homo sapiens"
100        },
101        {
102            "@id": "/human-donors/IGVFDO2650AGWB/",
103            "accession": "IGVFDO2650AGWB",
104            "aliases": [
105                "ansuman-satpathy:donor_of_WA14",
106                "igvf:donor_WA14"
107            ],
108            "sex": "male",
109            "status": "released",
110            "taxa": "Homo sapiens"
111        },
112        {
113            "@id": "/human-donors/IGVFDO8977PNMK/",
114            "accession": "IGVFDO8977PNMK",
115            "aliases": [
116                "ansuman-satpathy:donor_of_C001",
117                "igvf:donor_C001"
118            ],
119            "sex": "female",
120            "status": "released",
121            "taxa": "Homo sapiens"
122        },
123        {
124            "@id": "/human-donors/IGVFDO9716HDYX/",
125            "accession": "IGVFDO9716HDYX",
126            "aliases": [
127                "ansuman-satpathy:donor_of_A002",
128                "igvf:donor_A002"
129            ],
130            "sex": "male",
131            "status": "released",
132            "taxa": "Homo sapiens"
133        },
134        {
135            "@id": "/human-donors/IGVFDO5614PTYQ/",
136            "accession": "IGVFDO5614PTYQ",
137            "aliases": [
138                "ansuman-satpathy:donor_of_A004",
139                "igvf:donor_A004"
140            ],
141            "sex": "male",
142            "status": "released",
143            "taxa": "Homo sapiens"
144        },
145        {
146            "@id": "/human-donors/IGVFDO6169GISQ/",
147            "accession": "IGVFDO6169GISQ",
148            "aliases": [
149                "ansuman-satpathy:donor_of_B009",
150                "igvf:donor_B009"
151            ],
152            "sex": "male",
153            "status": "released",
154            "taxa": "Homo sapiens"
155        },
156        {
157            "@id": "/human-donors/IGVFDO6638HIAD/",
158            "accession": "IGVFDO6638HIAD",
159            "aliases": [
160                "igvf:donor_of_H1"
161            ],
162            "sex": "male",
163            "status": "released",
164            "taxa": "Homo sapiens"
165        },
166        {
167            "@id": "/human-donors/IGVFDO5656YCPC/",
168            "accession": "IGVFDO5656YCPC",
169            "aliases": [
170                "ansuman-satpathy:donor_of_Mel-1",
171                "igvf:donor_Mel-1"
172            ],
173            "sex": "male",
174            "status": "released",
175            "taxa": "Homo sapiens"
176        },
177        {
178            "@id": "/human-donors/IGVFDO1221XJAX/",
179            "accession": "IGVFDO1221XJAX",
180            "aliases": [
181                "ansuman-satpathy:donor_of_WA13",
182                "igvf:donor_WA13"
183            ],
184            "sex": "male",
185            "status": "released",
186            "taxa": "Homo sapiens"
187        },
188        {
189            "@id": "/human-donors/IGVFDO7140TLQJ/",
190            "accession": "IGVFDO7140TLQJ",
191            "aliases": [
192                "ansuman-satpathy:donor_of_Hues9",
193                "igvf:donor_Hues9"
194            ],
195            "sex": "female",
196            "status": "released",
197            "taxa": "Homo sapiens"
198        },
199        {
200            "@id": "/human-donors/IGVFDO8129FWUV/",
201            "accession": "IGVFDO8129FWUV",
202            "aliases": [
203                "ansuman-satpathy:donor_of_B011",
204                "igvf:donor_B011"
205            ],
206            "sex": "female",
207            "status": "released",
208            "taxa": "Homo sapiens"
209        },
210        {
211            "@id": "/human-donors/IGVFDO9617JBWJ/",
212            "accession": "IGVFDO9617JBWJ",
213            "aliases": [
214                "ansuman-satpathy:donor_of_B002",
215                "igvf:donor_B002"
216            ],
217            "sex": "female",
218            "status": "released",
219            "taxa": "Homo sapiens"
220        },
221        {
222            "@id": "/human-donors/IGVFDO5729MXSO/",
223            "accession": "IGVFDO5729MXSO",
224            "aliases": [
225                "ansuman-satpathy:donor_of_B008",
226                "igvf:donor_B008"
227            ],
228            "sex": "female",
229            "status": "released",
230            "taxa": "Homo sapiens"
231        },
232        {
233            "@id": "/human-donors/IGVFDO4134ZWBU/",
234            "accession": "IGVFDO4134ZWBU",
235            "aliases": [
236                "ansuman-satpathy:donor_of_B005",
237                "igvf:donor_B005"
238            ],
239            "sex": "male",
240            "status": "released",
241            "taxa": "Homo sapiens"
242        },
243        {
244            "@id": "/human-donors/IGVFDO2965ZTUG/",
245            "accession": "IGVFDO2965ZTUG",
246            "aliases": [
247                "ansuman-satpathy:donor_of_GM01680",
248                "igvf:donor_GM01680"
249            ],
250            "sex": "female",
251            "status": "released",
252            "taxa": "Homo sapiens"
253        },
254        {
255            "@id": "/human-donors/IGVFDO9904ZSML/",
256            "accession": "IGVFDO9904ZSML",
257            "aliases": [
258                "ansuman-satpathy:donor_of_RUES1",
259                "igvf:donor_RUES1"
260            ],
261            "sex": "male",
262            "status": "released",
263            "taxa": "Homo sapiens"
264        },
265        {
266            "@id": "/human-donors/IGVFDO0324ZSAY/",
267            "accession": "IGVFDO0324ZSAY",
268            "aliases": [
269                "ansuman-satpathy:donor_of_PENN020i-588-6",
270                "igvf:donor_PENN0201-588-6"
271            ],
272            "sex": "female",
273            "status": "released",
274            "taxa": "Homo sapiens"
275        },
276        {
277            "@id": "/human-donors/IGVFDO5261UCLF/",
278            "accession": "IGVFDO5261UCLF",
279            "aliases": [
280                "igvf:donor_of_RUES2",
281                "igvf:donor_RUES2"
282            ],
283            "sex": "female",
284            "status": "released",
285            "taxa": "Homo sapiens"
286        },
287        {
288            "@id": "/human-donors/IGVFDO7650ICPB/",
289            "accession": "IGVFDO7650ICPB",
290            "aliases": [
291                "ansuman-satpathy:donor_of_B001",
292                "igvf:donor_B001"
293            ],
294            "sex": "male",
295            "status": "released",
296            "taxa": "Homo sapiens"
297        },
298        {
299            "@id": "/human-donors/IGVFDO8129UUAA/",
300            "accession": "IGVFDO8129UUAA",
301            "aliases": [
302                "ansuman-satpathy:donor_of_C008",
303                "igvf:donor_C008"
304            ],
305            "sex": "female",
306            "status": "released",
307            "taxa": "Homo sapiens"
308        },
309        {
310            "@id": "/human-donors/IGVFDO0720ONIQ/",
311            "accession": "IGVFDO0720ONIQ",
312            "aliases": [
313                "ansuman-satpathy:donor_of_C004",
314                "igvf:donor_C004"
315            ],
316            "sex": "female",
317            "status": "released",
318            "taxa": "Homo sapiens"
319        },
320        {
321            "@id": "/human-donors/IGVFDO0183MFIP/",
322            "accession": "IGVFDO0183MFIP",
323            "aliases": [
324                "ansuman-satpathy:donor_of_KOLF2.2J",
325                "igvf:donor_KOLF2.2J"
326            ],
327            "sex": "male",
328            "status": "released",
329            "taxa": "Homo sapiens"
330        },
331        {
332            "@id": "/human-donors/IGVFDO2718IDDQ/",
333            "accession": "IGVFDO2718IDDQ",
334            "aliases": [
335                "igvf:donor_of_H9"
336            ],
337            "sex": "female",
338            "status": "released",
339            "taxa": "Homo sapiens"
340        },
341        {
342            "@id": "/human-donors/IGVFDO2817PSCX/",
343            "accession": "IGVFDO2817PSCX",
344            "aliases": [
345                "ansuman-satpathy:donor_of_A009",
346                "igvf:donor_A009"
347            ],
348            "sex": "female",
349            "status": "released",
350            "taxa": "Homo sapiens"
351        },
352        {
353            "@id": "/human-donors/IGVFDO4001VEAC/",
354            "accession": "IGVFDO4001VEAC",
355            "aliases": [
356                "ansuman-satpathy:donor_of_XM001",
357                "igvf:donor_XM001"
358            ],
359            "sex": "female",
360            "status": "released",
361            "taxa": "Homo sapiens"
362        },
363        {
364            "@id": "/human-donors/IGVFDO4876ENMD/",
365            "accession": "IGVFDO4876ENMD",
366            "aliases": [
367                "ansuman-satpathy:donor_of_C007",
368                "igvf:donor_C007"
369            ],
370            "sex": "female",
371            "status": "released",
372            "taxa": "Homo sapiens"
373        },
374        {
375            "@id": "/human-donors/IGVFDO7470LCGC/",
376            "accession": "IGVFDO7470LCGC",
377            "aliases": [
378                "ansuman-satpathy:donor_of_WA25",
379                "igvf:donor_WA25"
380            ],
381            "sex": "female",
382            "status": "released",
383            "taxa": "Homo sapiens"
384        },
385        {
386            "@id": "/human-donors/IGVFDO2750DZPB/",
387            "accession": "IGVFDO2750DZPB",
388            "aliases": [
389                "ansuman-satpathy:donor_of_B007",
390                "igvf:donor_B007"
391            ],
392            "sex": "male",
393            "status": "released",
394            "taxa": "Homo sapiens"
395        },
396        {
397            "@id": "/human-donors/IGVFDO6441FSJH/",
398            "accession": "IGVFDO6441FSJH",
399            "aliases": [
400                "ansuman-satpathy:donor_of_A003",
401                "igvf:donor_A003"
402            ],
403            "sex": "female",
404            "status": "released",
405            "taxa": "Homo sapiens"
406        },
407        {
408            "@id": "/human-donors/IGVFDO7725MEWB/",
409            "accession": "IGVFDO7725MEWB",
410            "aliases": [
411                "ansuman-satpathy:donor_of_GM00731",
412                "igvf:donor_GM00731"
413            ],
414            "sex": "male",
415            "status": "released",
416            "taxa": "Homo sapiens"
417        },
418        {
419            "@id": "/human-donors/IGVFDO1038DAII/",
420            "accession": "IGVFDO1038DAII",
421            "aliases": [
422                "ansuman-satpathy:donor_of_Hues6",
423                "igvf:donor_Hues6"
424            ],
425            "sex": "female",
426            "status": "released",
427            "taxa": "Homo sapiens"
428        },
429        {
430            "@id": "/human-donors/IGVFDO4452ZQSF/",
431            "accession": "IGVFDO4452ZQSF",
432            "aliases": [
433                "ansuman-satpathy:donor_of_B010",
434                "igvf:donor_B010"
435            ],
436            "sex": "male",
437            "status": "released",
438            "taxa": "Homo sapiens"
439        },
440        {
441            "@id": "/human-donors/IGVFDO7670TOWV/",
442            "accession": "IGVFDO7670TOWV",
443            "aliases": [
444                "ansuman-satpathy:donor_of_B012",
445                "igvf:donor_B012"
446            ],
447            "sex": "female",
448            "status": "released",
449            "taxa": "Homo sapiens"
450        },
451        {
452            "@id": "/human-donors/IGVFDO8315PGTI/",
453            "accession": "IGVFDO8315PGTI",
454            "aliases": [
455                "igvf:donor_HUES8"
456            ],
457            "sex": "male",
458            "status": "released",
459            "taxa": "Homo sapiens"
460        },
461        {
462            "@id": "/human-donors/IGVFDO6162MIWK/",
463            "accession": "IGVFDO6162MIWK",
464            "aliases": [
465                "ansuman-satpathy:donor_of_WA26",
466                "igvf:donor_WA26"
467            ],
468            "sex": "female",
469            "status": "released",
470            "taxa": "Homo sapiens"
471        },
472        {
473            "@id": "/human-donors/IGVFDO2492CCQG/",
474            "accession": "IGVFDO2492CCQG",
475            "aliases": [
476                "ansuman-satpathy:donor_of_B004",
477                "igvf:donor_B004"
478            ],
479            "sex": "female",
480            "status": "released",
481            "taxa": "Homo sapiens"
482        },
483        {
484            "@id": "/human-donors/IGVFDO2620HPCX/",
485            "accession": "IGVFDO2620HPCX",
486            "aliases": [
487                "ansuman-satpathy:donor_of_B003",
488                "igvf:donor_B003"
489            ],
490            "sex": "female",
491            "status": "released",
492            "taxa": "Homo sapiens"
493        },
494        {
495            "@id": "/human-donors/IGVFDO1964RNHE/",
496            "accession": "IGVFDO1964RNHE",
497            "aliases": [
498                "ansuman-satpathy:donor_of_C003",
499                "igvf:donor_C003"
500            ],
501            "sex": "male",
502            "status": "released",
503            "taxa": "Homo sapiens"
504        },
505        {
506            "@id": "/human-donors/IGVFDO3755LIBB/",
507            "accession": "IGVFDO3755LIBB",
508            "aliases": [
509                "ansuman-satpathy:donor_of_A006",
510                "igvf:donor_A006"
511            ],
512            "sex": "male",
513            "status": "released",
514            "taxa": "Homo sapiens"
515        },
516        {
517            "@id": "/human-donors/IGVFDO7813GMND/",
518            "accession": "IGVFDO7813GMND",
519            "aliases": [
520                "ansuman-satpathy:donor_of_A001",
521                "igvf:donor_A001"
522            ],
523            "sex": "female",
524            "status": "released",
525            "taxa": "Homo sapiens"
526        },
527        {
528            "@id": "/human-donors/IGVFDO8893DMFF/",
529            "accession": "IGVFDO8893DMFF",
530            "aliases": [
531                "ansuman-satpathy:donor_of_B006",
532                "igvf:donor_B006"
533            ],
534            "sex": "male",
535            "status": "released",
536            "taxa": "Homo sapiens"
537        },
538        {
539            "@id": "/human-donors/IGVFDO0657EMJH/",
540            "accession": "IGVFDO0657EMJH",
541            "aliases": [
542                "ansuman-satpathy:donor_of_GM01652",
543                "igvf:donor_GM01652"
544            ],
545            "sex": "female",
546            "status": "released",
547            "taxa": "Homo sapiens"
548        }
549    ],
550    "externally_hosted": false,
551    "file_set_type": "experimental data",
552    "files": [
553        {
554            "@id": "/sequence-files/IGVFFI3877GGNK/",
555            "accession": "IGVFFI3877GGNK",
556            "aliases": [
557                "ansuman-satpathy:igvf_exp16_atac_10x5_NGS2_r2"
558            ],
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568                "status": "released",
569                "term_name": "Illumina NovaSeq X"
570            },
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574        },
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579                "ansuman-satpathy:igvf_exp16_atac_10x5_NGS3_r2"
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595            "upload_status": "validated"
596        },
597        {
598            "@id": "/sequence-files/IGVFFI3864SEBN/",
599            "accession": "IGVFFI3864SEBN",
600            "aliases": [
601                "ansuman-satpathy:igvf_exp16_atac_10x5_NGS2_r3"
602            ],
603            "content_type": "reads",
604            "controlled_access": true,
605            "creation_timestamp": "2025-02-03T22:55:54.098644+00:00",
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610            "sequencing_platform": {
611                "@id": "/platform-terms/EFO_0022840/",
612                "status": "released",
613                "term_name": "Illumina NovaSeq X"
614            },
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1040    ],
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1042    "status": "released",
1043    "submitted_by": {
1044        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
1045        "title": "Christopher Mcginnis"
1046    },
1047    "submitted_files_timestamp": "2025-02-03T22:51:46.678358+00:00",
1048    "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)",
1049    "uuid": "c6980e36-7c66-479a-97d3-1c5f29574a42"
1050}