IGVFFI9908RNHL

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI9908RNHL/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9908RNHL",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "f0048d8580644e87fb49a23b70310481",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:49:19.612047+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI4401OYDF/",
26        "/sequence-files/IGVFFI5296SDLI/",
27        "/sequence-files/IGVFFI6918LTKM/",
28        "/sequence-files/IGVFFI6528JNXR/",
29        "/sequence-files/IGVFFI3120VVIL/",
30        "/sequence-files/IGVFFI6548LXNJ/",
31        "/sequence-files/IGVFFI2515ZDSF/",
32        "/sequence-files/IGVFFI9499DRUN/"
33    ],
34    "file_format": "tar",
35    "file_format_specifications": [
36        "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
37    ],
38    "file_set": {
39        "@id": "/analysis-sets/IGVFDS4060YBFY/",
40        "@type": [
41            "AnalysisSet",
42            "FileSet",
43            "Item"
44        ],
45        "accession": "IGVFDS4060YBFY",
46        "file_set_type": "intermediate analysis",
47        "samples": [
48            {
49                "@id": "/multiplexed-samples/IGVFSM8048YOZB/",
50                "@type": [
51                    "MultiplexedSample",
52                    "Sample",
53                    "Item"
54                ],
55                "accession": "IGVFSM8048YOZB",
56                "classifications": [
57                    "tissue",
58                    "multiplexed sample"
59                ],
60                "disease_terms": [],
61                "modifications": [],
62                "sample_terms": [
63                    {
64                        "@id": "/sample-terms/UBERON_0000473/",
65                        "status": "released",
66                        "term_name": "testis"
67                    },
68                    {
69                        "@id": "/sample-terms/UBERON_0000992/",
70                        "status": "released",
71                        "term_name": "ovary"
72                    },
73                    {
74                        "@id": "/sample-terms/UBERON_0000993/",
75                        "status": "released",
76                        "term_name": "oviduct"
77                    },
78                    {
79                        "@id": "/sample-terms/UBERON_0001301/",
80                        "status": "released",
81                        "term_name": "epididymis"
82                    },
83                    {
84                        "@id": "/sample-terms/UBERON_0002369/",
85                        "status": "released",
86                        "term_name": "adrenal gland"
87                    }
88                ],
89                "status": "released",
90                "summary": "multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples",
91                "taxa": "Mus musculus",
92                "treatments": []
93            }
94        ],
95        "status": "released",
96        "summary": "Parse SPLiT-seq: sparse gene count matrix"
97    },
98    "file_size": 1585414597,
99    "gene_list_for": [],
100    "href": "/matrix-files/IGVFFI9908RNHL/@@download/IGVFFI9908RNHL.tar.gz",
101    "input_file_for": [
102        "/matrix-files/IGVFFI5074IKKL/",
103        "/matrix-files/IGVFFI0091ZNMZ/",
104        "/matrix-files/IGVFFI1152NRZL/"
105    ],
106    "integrated_in": [],
107    "lab": {
108        "@id": "/labs/ali-mortazavi/",
109        "title": "Ali Mortazavi, UCI"
110    },
111    "loci_list_for": [],
112    "md5sum": "d89c3cc60a6fd4f4cb90d4b1effa4a33",
113    "principal_dimension": "cell",
114    "quality_metrics": [
115        "/single-cell-rna-seq-quality-metrics/e6f68acc-3514-4240-9fcc-403411c18a7c/"
116    ],
117    "reference_files": [
118        "/reference-files/IGVFFI9282QLXO/",
119        "/reference-files/IGVFFI9744VSJF/"
120    ],
121    "release_timestamp": "2025-04-19T17:55:56.966748+00:00",
122    "s3_uri": "s3://igvf-files/2025/04/06/f4ca3c43-32b7-4a72-89af-a2b84fd689f6/IGVFFI9908RNHL.tar.gz",
123    "schema_version": "7",
124    "secondary_dimensions": [
125        "gene"
126    ],
127    "status": "released",
128    "submitted_by": {
129        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
130        "title": "Diane Trout"
131    },
132    "submitted_file_name": "igvf_008/igvf_008_Subpool_7_total+core.tar.gz",
133    "summary": "cell by gene in sparse gene count matrix",
134    "upload_status": "validated",
135    "uuid": "f4ca3c43-32b7-4a72-89af-a2b84fd689f6",
136    "workflow": {
137        "@id": "/workflows/IGVFWF6241JYDF/",
138        "name": "UCI snRNA-seq workflow"
139    }
140}