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INDEXED
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MatrixFile
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IGVFFI9858AGRD
IGVFFI9858AGRD
released
validated
Json view
File Set
IGVFDS3159CKGQ
(HiCAR: contact matrix)
Summary
genomic position by genomic position in contact matrix
Analysis Step Version
/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/
File Format
mcool
Content Type
contact matrix
Content Summary
genomic position by genomic position in contact matrix
Aliases
charles-gersbach:matrix-file-crispra-region3-mouse-hl1-targeted-hicar-rep1-mcool
md5sum
71214d6432acf17185fdfb270b840b98
File Size
51 MB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/mouse/HL1_TA446_CA_1_ctrl.1000.mcool
Matrix Details
Principal Dimension
genomic position
Secondary Dimensions
genomic position
File Format Specifications
1 item
Page
Description
Type
Download
Preview
Contact matrix mcool files
file format specification
Cooler___supplementary_data.pdf
Download Cooler___supplementary_data.pdf
Download Cooler___supplementary_data.pdf
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM3147FFHB
InVitroSystem
HL-1
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
Reference Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6815WBWB
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated
Files This File Derives From
2 items
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI2546KBWD
IGVFDS7037REPR
fastq
reads
Charles Gersbach, Duke
1.2 GB
validated
IGVFFI8764YHFM
IGVFDS7037REPR
fastq
reads
Charles Gersbach, Duke
1.1 GB
validated
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4340DYQT
cool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
11 MB
validated
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke