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IGVFFI9778HTRQ

released
validated
File Set
IGVFDS0314XOTU(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/
File Format
tar
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
f177941dafa4253fd15e05eaf71dc859
Content MD5sum
51a21c5a275b1c9bf836de2987a20ed4
File Size
171 MB
Submitted File Name
igvf_012/igvf_012_Subpool_3_total+core.tar.gz
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format description for tar.gz archives of kallisto matrix market output
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

4 items
fastq
reads
Ali Mortazavi, UCI
7.0 GB
validated
fastq
reads
Ali Mortazavi, UCI
4.2 GB
validated
fastq
reads
Ali Mortazavi, UCI
3.9 GB
validated
fastq
reads
Ali Mortazavi, UCI
6.7 GB
validated

Files Derived From This File

5 items
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
81 GB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
31 GB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
50 GB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
23 GB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
98 GB
validated