IGVFFI9658NBQE

preview
validated
{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI9658NBQE/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI9658NBQE",
    "aliases": [
        "harinder-singh:Bcells_don1_pitt_multiome_day56_gex_molecule_info_mtx"
    ],
    "analysis_step_version": "/analysis-step-versions/e904b252-f348-4c6d-835c-5ae6bf91b9a0/",
    "assay_titles": [
        "10x multiome"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Preview matrix file [IGVFFI9658NBQE](/matrix-files/IGVFFI9658NBQE/) has in progress subobject reference file [IGVFFI0493XRYZ](/reference-files/IGVFFI0493XRYZ/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/IGVFFI9658NBQE/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012041/",
        "component": "networks"
    },
    "checkfiles_version": "v20",
    "content_summary": "cell by gene expression in raw feature barcode matrix",
    "content_type": "raw feature barcode matrix",
    "creation_timestamp": "2025-04-02T02:07:46.720057+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI7852LWTF/",
        "/sequence-files/IGVFFI1537OKCH/",
        "/sequence-files/IGVFFI6116IAQX/",
        "/sequence-files/IGVFFI1286IZXS/",
        "/sequence-files/IGVFFI7772UEUD/",
        "/sequence-files/IGVFFI7093OLBO/",
        "/sequence-files/IGVFFI1754THCG/",
        "/sequence-files/IGVFFI9748BAQD/",
        "/sequence-files/IGVFFI5082TVJJ/",
        "/sequence-files/IGVFFI1333PJNQ/",
        "/sequence-files/IGVFFI7053HMTF/",
        "/sequence-files/IGVFFI7452HGWP/",
        "/sequence-files/IGVFFI2329UPXX/",
        "/sequence-files/IGVFFI9775MMVU/",
        "/sequence-files/IGVFFI6810NXEL/",
        "/sequence-files/IGVFFI4056YITN/",
        "/sequence-files/IGVFFI3965FIQM/",
        "/sequence-files/IGVFFI0747UFCR/",
        "/sequence-files/IGVFFI9027QUQE/",
        "/sequence-files/IGVFFI7567EQCB/",
        "/sequence-files/IGVFFI4365QGIG/",
        "/sequence-files/IGVFFI6604ORPK/",
        "/sequence-files/IGVFFI8715LSIG/",
        "/sequence-files/IGVFFI8147EQBN/"
    ],
    "file_format": "hdf5",
    "file_format_specifications": [
        {
            "@id": "/documents/b6be3366-625f-4981-bce5-b13a98c94db3/",
            "description": "Format specification for gex_molecule_info.h5 files  derived from cellranger arc"
        }
    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS9046UDPN/",
        "@type": [
            "AnalysisSet",
            "FileSet",
            "Item"
        ],
        "accession": "IGVFDS9046UDPN",
        "controlled_access": true,
        "data_use_limitation_summaries": [
            "HMB"
        ],
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM1056LJKY/",
                "@type": [
                    "InVitroSystem",
                    "Biosample",
                    "Sample",
                    "Item"
                ],
                "accession": "IGVFSM1056LJKY",
                "classifications": [
                    "differentiated cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0000236/",
                        "status": "released",
                        "term_name": "B cell"
                    }
                ],
                "status": "preview",
                "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000980/",
                    "status": "released",
                    "term_name": "plasmablast"
                },
                "taxa": "Homo sapiens"
            }
        ],
        "status": "preview",
        "summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
    },
    "file_size": 447009112,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI9658NBQE/@@download/IGVFFI9658NBQE.h5",
    "input_file_for": [
        "/matrix-files/IGVFFI3586OAIM/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/harinder-singh/",
        "title": "Harinder Singh, University of Pittsburgh"
    },
    "loci_list_for": [],
    "md5sum": "43ce1b58afe141930bd2e054ac267f2f",
    "principal_dimension": "cell",
    "quality_metrics": [],
    "reference_files": [
        "/reference-files/IGVFFI0493XRYZ/",
        "/reference-files/IGVFFI5429KKCK/"
    ],
    "s3_uri": "s3://igvf-files/2025/04/02/f6f226b5-3950-4deb-ac15-408008104ee9/IGVFFI9658NBQE.h5",
    "schema_version": "7",
    "secondary_dimensions": [
        "gene expression"
    ],
    "status": "preview",
    "submitted_by": {
        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
        "title": "Nicholas Pease"
    },
    "submitted_file_name": "/ix/djishnu/Common_Folder/Jingyu_Data/multiome_1st_donor_UPMC_day5_6/outs/gex_molecule_info.h5",
    "summary": "cell by gene expression in raw feature barcode matrix",
    "upload_status": "validated",
    "uuid": "f6f226b5-3950-4deb-ac15-408008104ee9",
    "workflow": {
        "@id": "/workflows/IGVFWF8495CUNO/",
        "name": "Singh Single Cell Multiome Workflow",
        "uniform_pipeline": false
    }
}