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IGVFFI9503SXXQ

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS1588TVKF(interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix)
Summary
cell by UMI count in filtered feature barcode matrix
Analysis Step Version
/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/
File Format
hdf5
Content Type
filtered feature barcode matrix
Content Summary
cell by UMI count in filtered feature barcode matrix
Aliases
gary-hon:WTC11_TF_Perturb_Seq_Pilot_NPC_Lenti_PrimaryAnalysis_h5
md5sum
06da94fd830b72b7a91e28e833af968d
File Size
508 MB
Submitted File Name
/project/GCRB/Hon_lab/s215194/Single_Cell/TF_perturb_seq/_pipeline_reporcessing/_combined_npc/aggr_transciptome/TF_perturbseq_npc/outs/count/filtered_feature_bc_matrix.h5
Checkfiles Version
Legacy version of checkfiles

Matrix Details

Principal Dimension
cell
Secondary Dimensions
UMI count

Samples

4 items
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW281), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW282), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW284), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW283), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

96 items
fastq
reads
Gary Hon, UT
228 MB
validated
fastq
reads
Gary Hon, UT
217 MB
validated
fastq
reads
Gary Hon, UT
230 MB
validated
fastq
reads
Gary Hon, UT
424 MB
validated
fastq
reads
Gary Hon, UT
305 MB
validated
fastq
reads
Gary Hon, UT
79 MB
validated
fastq
reads
Gary Hon, UT
207 MB
validated
fastq
reads
Gary Hon, UT
732 MB
validated
fastq
reads
Gary Hon, UT
234 MB
validated
fastq
reads
Gary Hon, UT
83 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
cell by gene expression in sparse gene count matrix
Gary Hon, UT
17 GB
validated

Attribution

Award
HG011996
Principal Investigator(s)
Contact P.I.
Gary Hon
Lab
Gary Hon, UT