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IGVFFI9496UPFJ

released
validated
File Set
IGVFDS4011VZXE(activation Perturb-seq: filtered feature barcode matrix)
Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Analysis Step Version
/analysis-step-versions/fbd5e8fb-4206-4b43-92d6-922cdfe1338b/
File Format
tar
Content Type
filtered feature barcode matrix
Content Summary
gene by gene expression by CRISPR guide capture in filtered feature barcode matrix
Aliases
charles-gersbach:cd8-tcells-perturb-seq-10x-5prime-mm-crispra-rep1
md5sum
263ad367934369cd27b24dee36acce9f
Content MD5sum
dfbbc74d4cc662f8bf616109573866ef
File Size
310 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/CRISPRa_D1_10x.tar.gz
Submitter Comment
Cell Ranger Count Pipeline run with chemistry argument 'SC5P-R2'

Matrix Details

Principal Dimension
gene
Secondary Dimensions
gene expression, CRISPR guide capture

Samples

3 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
873 MB
validated

Files This File Derives From

16 items
fastq
reads
Charles Gersbach, Duke
8.3 GB
validated
fastq
reads
Charles Gersbach, Duke
2.6 GB
validated
fastq
reads
Charles Gersbach, Duke
8.4 GB
validated
fastq
reads
Charles Gersbach, Duke
2.6 GB
validated
fastq
reads
Charles Gersbach, Duke
21 GB
validated
fastq
reads
Charles Gersbach, Duke
1.4 GB
validated
fastq
reads
Charles Gersbach, Duke
21 GB
validated
fastq
reads
Charles Gersbach, Duke
1.4 GB
validated
fastq
reads
Charles Gersbach, Duke
21 GB
validated
fastq
reads
Charles Gersbach, Duke
8.4 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
differential gene expression quantifications
GRCh38 differential gene expression quantifications
Charles Gersbach, Duke
23 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke