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IGVFFI9438KOCK

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS3401CMEA(single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome))
Summary
cell by gene expression in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/7f2aa3a7-cffa-4b86-b41c-ace909237d28/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene expression in sparse gene count matrix
Aliases
harinder-singh:Bcells_don1_pitt_multiome_gex_mira_mtx
md5sum
58438575f555eaead37f64e666f0b8ec
File Size
1.9 GB
Submitted File Name
/ix/djishnu/peasena/primary_multiome/donor1_upmc/h5_files/donor1_multiome_gex_post_mira.h5ad
Checkfiles Version
v20
Attribution
Harinder Singh, University of Pittsburgh

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene expression

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Format specification for gene expression h5ad files derived from MIRA joint topic modeling
file format specification

Samples

3 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
gtf
transcriptome reference
GRCh38 GENCODE 32 transcriptome reference
Ansuman Satpathy, Stanford
55 MB
validated

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
hdf5
filtered feature barcode matrix
Harinder Singh, University of Pittsburgh
514 MB
validated