IGVFFI9430CLWM

released
validated
{
    "@context": "/terms/",
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    "accession": "IGVFFI9430CLWM",
    "aliases": [
        "ansuman-satpathy:igvf17_raw_rna_counts_10x5"
    ],
    "analysis_step_version": "/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/",
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released matrix file [IGVFFI9430CLWM](/matrix-files/IGVFFI9430CLWM/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
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                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/IGVFFI9430CLWM/"
            },
            {
                "category": "mismatched status",
                "detail": "Released matrix file [IGVFFI9430CLWM](/matrix-files/IGVFFI9430CLWM/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
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                "path": "/matrix-files/IGVFFI9430CLWM/"
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        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "checkfiles_version": "v14",
    "content_summary": "cell by gene in raw feature barcode matrix",
    "content_type": "raw feature barcode matrix",
    "creation_timestamp": "2025-01-28T23:12:06.642671+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI1514EJBS/",
        "/sequence-files/IGVFFI8307CRFZ/",
        "/sequence-files/IGVFFI4512PDWA/",
        "/sequence-files/IGVFFI9302ZMEC/",
        "/sequence-files/IGVFFI8289PJVD/",
        "/sequence-files/IGVFFI4612QDKN/",
        "/sequence-files/IGVFFI9911JODD/",
        "/sequence-files/IGVFFI4353QSPB/",
        "/sequence-files/IGVFFI2613EKTB/",
        "/sequence-files/IGVFFI1271MOSD/",
        "/sequence-files/IGVFFI4251LYXD/",
        "/sequence-files/IGVFFI4259UEYN/",
        "/sequence-files/IGVFFI4656FZOP/",
        "/sequence-files/IGVFFI4831HFMZ/",
        "/sequence-files/IGVFFI6191QTWY/",
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        "accession": "IGVFDS0398ALPE",
        "file_set_type": "intermediate analysis",
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                "accession": "IGVFSM6345RLEH",
                "classifications": [
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                        "@id": "/sample-terms/EFO_0009320/",
                        "status": "released",
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                ],
                "status": "released",
                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
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                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
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            {
                "@id": "/multiplexed-samples/IGVFSM7909ETQJ/",
                "accession": "IGVFSM7909ETQJ",
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                    }
                ],
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                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
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                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
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                ],
                "status": "released",
                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
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    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI9430CLWM/@@download/IGVFFI9430CLWM.h5",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "6f7014268f319b8cc99afdf39320e73f",
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    "quality_metrics": [],
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    "release_timestamp": "2025-03-07T06:05:30.884530+00:00",
    "s3_uri": "s3://igvf-files/2025/01/28/96e41ab1-7d9b-42f5-9e12-68b808a1e94b/IGVFFI9430CLWM.h5",
    "schema_version": "7",
    "secondary_dimensions": [
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    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf17/e17l5_raw_feature_bc_matrix.h5",
    "summary": "cell by gene in raw feature barcode matrix",
    "upload_status": "validated",
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    "workflow": {
        "@id": "/workflows/IGVFWF1453HVEC/",
        "name": "Satpathy Cell Ranger",
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}