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IGVFFI9418VTSZ

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS2873EPIU(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
cell by gene expression in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene expression in sparse gene count matrix
Aliases
gary-hon:H9_shen_construct_sgRNA_Lenti_PrimaryAnalysis_h5ad
md5sum
007077750b0dea08889b577e0c603b59
File Size
12 GB
Submitted File Name
/project/shared/gcrb_igvf/data/shared/CMPILOT2_Mini_Lenti_scRNAseq/H5AD/V0._CM_Pilot02_Mini_sgRNACells_filtered_w_embedding_full_reprocessed.h5ad
Checkfiles Version
Legacy version of checkfiles
Attribution
Gary Hon, UT

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene expression

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW272) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW271) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW270) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW269) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

2 items
hdf5
filtered feature barcode matrix
Gary Hon, UT
426 MB
validated
pkl
raw feature barcode matrix
Gary Hon, UT
1.4 GB
validated